PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013903564.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family AP2
Protein Properties Length: 441aa    MW: 42870.1 Da    PI: 4.7086
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013903564.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.27.5e-12373428144
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse....ng......kr.krfslgkfgtaeeAak 44 
                     s ykGV++++++grW+A+I+d  s     +g       r k+ +lg+++t+ +Aa+
  XP_013903564.1 373 SSYKGVTRHRRTGRWEAHIWDgASPaagsDGvaakpgGRgKQLYLGSYDTELDAAR 428
                     67*******************5555965444998887336**********778887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-6373429IPR016177DNA-binding domain
PfamPF008471.4E-5373428IPR001471AP2/ERF domain
PROSITE profilePS5103212.233374428IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-7374428IPR001471AP2/ERF domain
SMARTSM003804.2E-5374441IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MAEPAPKRGP GQAEAERTTK RPKVDESPAA PTSTTAALAS PLPDSSRTSA HENGAAAPPA  60
PGAGALPQSP QLPSPLQSPP QERISMEEDF QGEEALGVAR PDALGTVGAA AADDTAGAPA  120
AAPPSAIAAA AAEDTHQGGA AAVGEGPSLG AEAAAGGASG DASGVALDGS EGGGSDEGSP  180
PQGFKEEFEA SEDEKGEQEA AARALATGGE SAAAEGDAPA VEDQPPAAAP LGPHDWLPPP  240
PNVPLSPALM QSTATTALQR LLGASAAVRS APPSTVTAGL PPAHPGARAL VLPPGLKQQL  300
TAVAASPTAP PAPAAAAGAV AAITAAAAAA PPGADPSAPP GRVAARQLRG SKAGAPSAVQ  360
RIQRRKNASP STSSYKGVTR HRRTGRWEAH IWDGASPAAG SDGVAAKPGG RGKQLYLGSY  420
DTELDAARCA WGSAPPGVDA V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013903564.10.0hypothetical protein MNEG_3407
TrEMBLA0A0D2MPD30.0A0A0D2MPD3_9CHLO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-11AP2 family protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]