PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013903039.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family MYB_related
Protein Properties Length: 647aa    MW: 71579 Da    PI: 7.0252
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013903039.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.7e-08589636247
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                      g W +  ++ lv++ kq+G++   +W++Ia  ++ g++  qc  r+  +
   XP_013903039.1 589 GEWNEAQELALVQGLKQFGKElpdRWERIAGVVQ-GKSKAQCFKRFKEL 636
                      79********************************.*******9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465655.23E-7100167IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1105.3E-5128157IPR001623DnaJ domain
PROSITE profilePS512937.587429481IPR017884SANT domain
SMARTSM007176.7E-4430482IPR001005SANT/Myb domain
SuperFamilySSF466891.4E-6432474IPR009057Homeodomain-like
CDDcd001670.00592433472No hitNo description
PROSITE profilePS512939.537586641IPR017884SANT domain
SuperFamilySSF466891.4E-9587636IPR009057Homeodomain-like
SMARTSM007171.7E-8587639IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-4588636IPR009057Homeodomain-like
PfamPF002492.0E-6589636IPR001005SANT/Myb domain
CDDcd001676.06E-6590637No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MLLLEHYEVD ASSLGAVAPM AGLLQCAAKE PAGVAFHTTV LRQQGLLVDK EEDSTLNAGA  60
GEAAESSRPL SAGGADADLQ PPPGVSWKRS KAKQKGDKKK KDSDYYALLG LQNERWTATD  120
QQIKLGGEAY EVLSDPAKRR EYDSTDEFDD TLPTSCAAAD FFKVFGPAFR RNSRWSVDRA  180
VPDVGSLDTP WSEVSAFYDF WYSFKSWREF PHPDEEDVES AESREHRRWI ERINSKLREK  240
GKKEEAKRLR EFVDAAYRID PRIAARKDLE RLERERKKAE KEDAKRLQRE EEERKKAEED  300
ARRREEEEEA KRNAAEAKRQ READKKLLKR ERQRLRALVD GGGGAGRLLG EDETEKLCQG  360
LDTAALAALC EAASAKGLSS EQQRGVLEAQ LEEMRRGEAS AAEERERQKE LAAAALKDIA  420
KRDHERRMAS MSEWTDEELR LLDKACTKFP MGTPRRWEAV AAYVRTRPLD EVLLMVKERQ  480
GAASNRLRQQ EDWKGAAKKR AEVTSEADLR CMAFTDVEVS VLAEGTAAAT QQQTAAATSS  540
SSIAGPGPGK GAGSGGSKGG AAENAAAAGT GNGSGVGAKP KKVVSADSGE WNEAQELALV  600
QGLKQFGKEL PDRWERIAGV VQGKSKAQCF KRFKELKDAF KAKKTEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A9e-1715326313123Zuotin
5dje_B9e-1715326313123Zuotin
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013903039.10.0putative DnaJ subfamily C member 2
TrEMBLA0A0D2MML50.0A0A0D2MML5_9CHLO; Putative DnaJ subfamily C member 2
STRINGXP_002953749.11e-169(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP118489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.14e-58DnaJ domain ;Myb-like DNA-binding domain
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]