PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013902922.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | MYB_related | ||||||||
Protein Properties | Length: 123aa MW: 14051.1 Da PI: 11.1479 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.1 | 9.8e-09 | 34 | 62 | 15 | 45 |
HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 15 avkqlGggtWktIartmgkgRtlkqcksrwq 45 a + + ++ W++Iar + +Rt++ +k++w+ XP_013902922.1 34 AQECYTNR-WAAIARLLE-RRTDNAVKNHWH 62 55557778.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.551 | 20 | 65 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.79E-7 | 33 | 69 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-6 | 33 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.40E-5 | 35 | 65 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-9 | 36 | 73 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MPASEGAGHQ VMDGGREAFW WIEIRQKLPL AAQAQECYTN RWAAIARLLE RRTDNAVKNH 60 WHATLKRKAL AGTLQNRFIE QGATLEWLLA NREPEGVRDT AAAAVRRSHK VRVWRRLCAQ 120 ALL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013902922.1 | 6e-85 | hypothetical protein MNEG_4057 | ||||
TrEMBL | A0A0D2JZG0 | 1e-83 | A0A0D2JZG0_9CHLO; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 4e-12 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Entrez Gene | 25736935 |
Publications ? help Back to Top | |||
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