PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013902072.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family GATA
Protein Properties Length: 758aa    MW: 79452.1 Da    PI: 6.5076
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013902072.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA481.7e-15110144135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cgt ++++WR+gp  +++LCnaCGl++ k+++
  XP_013902072.1 110 CSHCGTQSSSQWRSGPPEKPCLCNACGLFWSKRRS 144
                     ****************88888***********986 PP

2GATA40.73.3e-13160193135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+ ++ +WR gp+g   LC +CGl+yrk+++
  XP_013902072.1 160 CTHCGAESSNQWRAGPEGVA-LCDPCGLHYRKTKT 193
                     ********************.***********976 PP

3GATA48.41.3e-15209240132
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                     C++Cgt  +p+WR gp   + LCnaCGl++rk
  XP_013902072.1 209 CHHCGTRFSPQWRGGPPEASVLCNACGLFWRK 240
                     ****************99999**********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.1E-8104154IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-9106144No hitNo description
CDDcd002021.12E-13109158No hitNo description
Gene3DG3DSA:3.30.50.103.2E-11110143IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440110135IPR000679Zinc finger, GATA-type
PfamPF003201.0E-12110144IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.356110138IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-9154197No hitNo description
SMARTSM004014.5E-5155201IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.8E-10157196IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.19E-6159201No hitNo description
PfamPF003209.8E-11160193IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.624160189IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-12203254IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-11208246No hitNo description
Gene3DG3DSA:3.30.50.105.8E-12209241IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440209234IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.554209239IPR000679Zinc finger, GATA-type
PfamPF003201.3E-13209240IPR000679Zinc finger, GATA-type
CDDcd002022.70E-14209240No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MPRGGALGGV PQLLMLKPAG IASGGAGTAA FTQQLLASMA KQQRAGGQPR PILPQASGTA  60
AGLAPAALGA TVASTAADPV AQQQQQQQQQ QQQQQPAPVR RAGSSLRGPC SHCGTQSSSQ  120
WRSGPPEKPC LCNACGLFWS KRRSLPEETC KVADELKGPC THCGAESSNQ WRAGPEGVAL  180
CDPCGLHYRK TKTLPKRKRR SLTVAFQGCH HCGTRFSPQW RGGPPEASVL CNACGLFWRK  240
FKNLPQKERQ RSGGGGGGEH LAAESEDEGQ GVEAAEEGAE DGAGAGEGGG LEEADEAAAM  300
EAAAILGCGT LVGLQGVVPA QQHPQQQPLR PRARPAQRAA RQQQQQQQQQ QQQQQQQQQQ  360
RREGGADDDG DADWEEELLV IQQQQQQQRR RKRRRTEEGR FVESSEPDAA EPAPGAAVAP  420
GAAAPERGGG GVGAGAGGSP AASGGSGGGA ISAGSSSIKG NSVAGATASE GAAAVLQRLS  480
ADIFARATNG GAAAAGRGAC GTGAGDAALA KPTRGGVARN ALWQQAMWQQ MWQQHQQQQQ  540
GIVIGVPVDE VYMHAHAQAG QQLHTNTGLP QPHPQPQPPQ QQQQQQQQQQ QPQQPQQQQQ  600
QPPQPPPPQQ QQQPEEQETA SEEGEQRQAG RRDDQTDAQQ KGDEWGPESG RVGAQPQHST  660
CDGHGGGELS LAPQQEQVRD KQEQQQQQEQ QEQPQCQVGE SREDPLRQLA PKPPSQQREQ  720
QTTQGEPVAS DAIGGAAVPA ALPTPGASAP AVAGVQAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1387393QRRRKRR
2387394QRRRKRRR
3388394RRRKRRR
4390394RKRRR
5390395RKRRRT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013902072.10.0hypothetical protein MNEG_4906
TrEMBLA0A0D2JWG40.0A0A0D2JWG4_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4501526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.14e-10GATA transcription factor 27
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]