PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013902072.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 758aa MW: 79452.1 Da PI: 6.5076 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 48 | 1.7e-15 | 110 | 144 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cgt ++++WR+gp +++LCnaCGl++ k+++ XP_013902072.1 110 CSHCGTQSSSQWRSGPPEKPCLCNACGLFWSKRRS 144 ****************88888***********986 PP | |||||||
2 | GATA | 40.7 | 3.3e-13 | 160 | 193 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ ++ +WR gp+g LC +CGl+yrk+++ XP_013902072.1 160 CTHCGAESSNQWRAGPEGVA-LCDPCGLHYRKTKT 193 ********************.***********976 PP | |||||||
3 | GATA | 48.4 | 1.3e-15 | 209 | 240 | 1 | 32 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 C++Cgt +p+WR gp + LCnaCGl++rk XP_013902072.1 209 CHHCGTRFSPQWRGGPPEASVLCNACGLFWRK 240 ****************99999**********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.1E-8 | 104 | 154 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.75E-9 | 106 | 144 | No hit | No description |
CDD | cd00202 | 1.12E-13 | 109 | 158 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.2E-11 | 110 | 143 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 110 | 135 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.0E-12 | 110 | 144 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 10.356 | 110 | 138 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.05E-9 | 154 | 197 | No hit | No description |
SMART | SM00401 | 4.5E-5 | 155 | 201 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 8.8E-10 | 157 | 196 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.19E-6 | 159 | 201 | No hit | No description |
Pfam | PF00320 | 9.8E-11 | 160 | 193 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.624 | 160 | 189 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.6E-12 | 203 | 254 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.55E-11 | 208 | 246 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.8E-12 | 209 | 241 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 209 | 234 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 10.554 | 209 | 239 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.3E-13 | 209 | 240 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 2.70E-14 | 209 | 240 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 758 aa Download sequence Send to blast |
MPRGGALGGV PQLLMLKPAG IASGGAGTAA FTQQLLASMA KQQRAGGQPR PILPQASGTA 60 AGLAPAALGA TVASTAADPV AQQQQQQQQQ QQQQQPAPVR RAGSSLRGPC SHCGTQSSSQ 120 WRSGPPEKPC LCNACGLFWS KRRSLPEETC KVADELKGPC THCGAESSNQ WRAGPEGVAL 180 CDPCGLHYRK TKTLPKRKRR SLTVAFQGCH HCGTRFSPQW RGGPPEASVL CNACGLFWRK 240 FKNLPQKERQ RSGGGGGGEH LAAESEDEGQ GVEAAEEGAE DGAGAGEGGG LEEADEAAAM 300 EAAAILGCGT LVGLQGVVPA QQHPQQQPLR PRARPAQRAA RQQQQQQQQQ QQQQQQQQQQ 360 RREGGADDDG DADWEEELLV IQQQQQQQRR RKRRRTEEGR FVESSEPDAA EPAPGAAVAP 420 GAAAPERGGG GVGAGAGGSP AASGGSGGGA ISAGSSSIKG NSVAGATASE GAAAVLQRLS 480 ADIFARATNG GAAAAGRGAC GTGAGDAALA KPTRGGVARN ALWQQAMWQQ MWQQHQQQQQ 540 GIVIGVPVDE VYMHAHAQAG QQLHTNTGLP QPHPQPQPPQ QQQQQQQQQQ QPQQPQQQQQ 600 QPPQPPPPQQ QQQPEEQETA SEEGEQRQAG RRDDQTDAQQ KGDEWGPESG RVGAQPQHST 660 CDGHGGGELS LAPQQEQVRD KQEQQQQQEQ QEQPQCQVGE SREDPLRQLA PKPPSQQREQ 720 QTTQGEPVAS DAIGGAAVPA ALPTPGASAP AVAGVQAA |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 387 | 393 | QRRRKRR |
2 | 387 | 394 | QRRRKRRR |
3 | 388 | 394 | RRRKRRR |
4 | 390 | 394 | RKRRR |
5 | 390 | 395 | RKRRRT |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013902072.1 | 0.0 | hypothetical protein MNEG_4906 | ||||
TrEMBL | A0A0D2JWG4 | 0.0 | A0A0D2JWG4_9CHLO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP450 | 15 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47140.1 | 4e-10 | GATA transcription factor 27 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 25737783 |
Publications ? help Back to Top | |||
---|---|---|---|
|