PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013901459.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family MYB_related
Protein Properties Length: 604aa    MW: 60818.2 Da    PI: 8.2755
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013901459.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.2e-1356103145
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      r++WT+eE+ +lv+++k++G++    W++I r++  gR+++++k++w+
   XP_013901459.1  56 RDSWTKEEQRQLVQGHKKFGTKfgtKWSKIVREFLPGRSANDVKNWWN 103
                      789******************************999***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071744652IPR001005SANT/Myb domain
PROSITE profilePS500906.8291450IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-131757IPR009057Homeodomain-like
CDDcd001670.002442150No hitNo description
SuperFamilySSF466893.09E-2136110IPR009057Homeodomain-like
PROSITE profilePS5129420.40351110IPR017930Myb domain
SMARTSM007177.0E-1355108IPR001005SANT/Myb domain
PfamPF002496.5E-1156103IPR001005SANT/Myb domain
CDDcd001671.73E-1158106No hitNo description
Gene3DG3DSA:1.10.10.601.2E-1558108IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MHPTRREREV GVRNEEGIVT NWPEIAHAFN ESSETERTAK QCRERWTNHL DPNIKRDSWT  60
KEEQRQLVQG HKKFGTKFGT KWSKIVREFL PGRSANDVKN WWNATLRRQN PSPQGSGPLE  120
EYIVQQGLRG PTHEAAAGSG SGAGGGGSGG RPRKRARAQP APCAAPGGSG DGSGGSGAGG  180
GGGGGGGGGG VVELEYREQD PLWLPGSGGV RQPVVAPVAA AAVCVEQATP YWEPGSPLVL  240
EGAGSAAASG AVPQAEAEAA AVATSRADGE LGYSPGLPDK DAELLRSIWG LVPAARDREP  300
TPSASPPPMG AQPAPRPADS PVAAASAARP GGQADAAAGL GAASQSAPER APAAAGAPAG  360
CPRVGVSPSR CGTPDEAAAP PPPGLVHGQG LISSPAGHAH ASPRARVPVF ASCTSPPPMA  420
AAPNAGASAG PPASAPQSAQ LLAVWLRGEE VIVALSEGAA PLPPLHEICS ALLAPTAGGA  480
PSPCREVLSS ISYGPQAVSG SHAAMAAVTL PAERPHPMQW RGPDAAVRAL AADLQAVLPR  540
LAANACAPAA ATGAVGRVLI GLRLDAAVRP SEPGLVVAVA ARSRGEGAAM LKCVVDAIRS  600
RLYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-203710960127MYB TRANSFORMING PROTEIN
1mse_C3e-203710937104C-Myb DNA-Binding Domain
1msf_C3e-203710937104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013901459.10.0Myb-related protein 3R-1
TrEMBLA0A0D2MH810.0A0A0D2MH81_9CHLO; Myb-related protein 3R-1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25230.11e-17myb domain protein 100
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]