PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013901336.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

MYB

Protein Properties

Length: 811aa MW: 85370.1 Da PI: 7.8482

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013901336.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.1	4.3e-13	16	57	1	43
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 r +WT++Ed+ll avk +G + W+t+a+ ++ gR+ k+c +r XP_013901336.1 16 RSAWTEQEDDLLRAAVKNYGDRAWATVANDVP-GRSSKSCSDR 57 789***************************.*****766 PP
2	Myb_DNA-binding	27.3	8.5e-09	84	123	1	42
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 + +++++E v+a +++G++ Wk+I+ ++ gRt +k+ XP_013901336.1 84 KSPFSEWEVAVVVQAQHRYGNN-WKAISMLLP-GRTNRAVKN 123 579***************99.*****.**99997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.933	11	79	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.3E-15	14	76	IPR009057	Homeodomain-like
SMART	SM00717	6.6E-9	15	64	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-11	16	57	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.35E-17	16	125	IPR009057	Homeodomain-like
CDD	cd00167	9.09E-10	18	57	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.9E-9	77	128	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.094	81	133	IPR017930	Myb domain
SMART	SM00717	2.0E-5	83	131	IPR001005	SANT/Myb domain
Pfam	PF00249	3.2E-6	84	123	IPR001005	SANT/Myb domain
CDD	cd00167	2.97E-5	86	123	No hit	No description
SuperFamily	SSF81995	5.75E-5	532	595	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 811 aa Download sequence Send to blast
MRGEAGQMHL NSAQSRSAWT EQEDDLLRAA VKNYGDRAWA TVANDVPGRS SKSCSDRRTC 60 RSRPHPALHR WRNFLSPDIE HPRKSPFSEW EVAVVVQAQH RYGNNWKAIS MLLPGRTNRA 120 VKNLFVGNLK WGARLPEIQN RYLETKTPLE DLLEVKPDYA GGPPKERPAL LMGPHGAHRQ 180 QHHALGGHHG LALGGSASPS SLVAASTSSA GSAWASDMTD QPMAGGAPLH GVPHYSGVPS 240 HLGGGRRPRE GTEGGSPSGG MGTPKAANKR RRGGGPGGSP AGGAAHPCAS ESGAGQALVD 300 GPVHLDMSGM GVGVQGIGMG LGLGGGGMPA YLSADMGAPM QGLAPMQPLH DPSAAHQLQL 360 MAQQQQQQHQ QQQMLMQQQR MQQQQMHMHP QHHMSHGRLD THSHHGAHSH HHHQQQQHPS 420 VPSLHALSPG SDNDHTTHAP LGGAIGGSGG DGLLASLQGH QSNDSMMLQQ IMDQILEDDE 480 MLSDPAMTKH LLGSPTSSPL LPPHCGASSG GAAAGATACE GAAGMARAST WPNTWPDTQQ 540 QQQQQQQQQQ QQQQQQQQQQ VQQQQQQQQQ LKLEQQQQQQ PQQHGLIPFD CGRTSPAMRT 600 SSCGAAGMGA PLPPRALAGA PPCGWWSGGG PGEGGDVVTG SVTAGSFLHP SRRVSTGDFA 660 SGDVLGGAHR HNGAAPGGPP TPGAGAPAGG GQLQHVKLEQ QQQPPQQQPQ QQQQQQPQMM 720 RMLCHQLQQE NLLLMQRVHS LQERLAGTPA PQPQPDSLGL APCLPPLAPP QPAPAASPSP 780 AAAGGWAGVP TPPLLGPGAG GKHEDARAQL P

Sequence ? help Back to Top

Protein Sequence Length: 811 aa Download sequence Send to blast

MRGEAGQMHL NSAQSRSAWT EQEDDLLRAA VKNYGDRAWA TVANDVPGRS SKSCSDRRTC  60
RSRPHPALHR WRNFLSPDIE HPRKSPFSEW EVAVVVQAQH RYGNNWKAIS MLLPGRTNRA  120
VKNLFVGNLK WGARLPEIQN RYLETKTPLE DLLEVKPDYA GGPPKERPAL LMGPHGAHRQ  180
QHHALGGHHG LALGGSASPS SLVAASTSSA GSAWASDMTD QPMAGGAPLH GVPHYSGVPS  240
HLGGGRRPRE GTEGGSPSGG MGTPKAANKR RRGGGPGGSP AGGAAHPCAS ESGAGQALVD  300
GPVHLDMSGM GVGVQGIGMG LGLGGGGMPA YLSADMGAPM QGLAPMQPLH DPSAAHQLQL  360
MAQQQQQQHQ QQQMLMQQQR MQQQQMHMHP QHHMSHGRLD THSHHGAHSH HHHQQQQHPS  420
VPSLHALSPG SDNDHTTHAP LGGAIGGSGG DGLLASLQGH QSNDSMMLQQ IMDQILEDDE  480
MLSDPAMTKH LLGSPTSSPL LPPHCGASSG GAAAGATACE GAAGMARAST WPNTWPDTQQ  540
QQQQQQQQQQ QQQQQQQQQQ VQQQQQQQQQ LKLEQQQQQQ PQQHGLIPFD CGRTSPAMRT  600
SSCGAAGMGA PLPPRALAGA PPCGWWSGGG PGEGGDVVTG SVTAGSFLHP SRRVSTGDFA  660
SGDVLGGAHR HNGAAPGGPP TPGAGAPAGG GQLQHVKLEQ QQQPPQQQPQ QQQQQQPQMM  720
RMLCHQLQQE NLLLMQRVHS LQERLAGTPA PQPQPDSLGL APCLPPLAPP QPAPAASPSP  780
AAAGGWAGVP TPPLLGPGAG GKHEDARAQL P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-15	7	123	18	118	MYB TRANSFORMING PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013901336.1	0.0	hypothetical protein MNEG_5639
TrEMBL	A0A0D2MP65	0.0	A0A0D2MP65_9CHLO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15	16	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	5e-20	myb domain protein 77

Link Out ? help Back to Top
Entrez Gene	25738516

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]