PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013900780.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family C3H
Protein Properties Length: 898aa    MW: 92014.1 Da    PI: 6.8243
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013900780.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.6e-07107130226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     k  +C +f + G C +Gd+Ck++H+
  XP_013900780.1 107 KVQICYDFTK-GMCTRGDKCKYSHD 130
                     7889******.*************6 PP
2zf-CCCH17.95.3e-06208228526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C +f + G C++G+ C+++H+
  XP_013900780.1 208 ICYDFVK-GLCQRGAECRYSHD 228
                     7******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.3E-6105131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.751105132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5107130IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4107130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5107130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.798139166IPR000571Zinc finger, CCCH-type
SMARTSM003560.0045140165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638203230IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018203229IPR000571Zinc finger, CCCH-type
SMARTSM0035633285306IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.268289307IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MADCQEDGEG VAECEATSGT LVLGSTEEMA ARFDATLAEQ QQQQQWAEEQ AYDGASGVQA  60
VSAASDDSGA EPGQTPDGPG GSGGGSPPSG AGLAGGALDG GTDGGDKVQI CYDFTKGMCT  120
RGDKCKYSHD IATIVHFNSR EKGICFDYLR GQCHRGLLCR FSHDLSNIAQ QCQVPDAPDS  180
AQASAPGADA VDAAPGGAAQ QQRRVASICY DFVKGLCQRG AECRYSHDIT LIVRTARGGL  240
GPGAGPPPAM DVCYDFLRRV RGLGGIGGTE LLLAWVCSAP SDGLGTRLLG SGRCSRGSSC  300
KYSHRVATLG DGPLGSSPWP GPMGLLPPGA AAAAAAALRA PAHVLGAPVG PLVPNGAPLR  360
MLLNHRGQAA AAGAPPVPGA FAPHHAPTPP AGYLPSGAAL QPPSTGAAQL PGLLAAMAQQ  420
HLQQQQQQYQ HYQQQYSQQQ QQQQQYQHAA MVAASAMVQQ QQQQRLDTFH RQRPSFSGSA  480
GSADAEGSLE PASGCGSLGA ADGTHGLPPR PPSVGQAPGG AQGGFAGGAP AFGPGGTCQP  540
SGSVIGGERR LLPGPLATGA DLIAATSSGL RTMHLQDSGG SGGGRHRQEQ QQQPQQQQQQ  600
QPWGSKAEPR RSDGGAAVPN ALAGGGPGAG APWATQQQAP HMSRAYSAPA EGAMELGALQ  660
APPVHVGRQS LSGGAQMLPL PQRRQQHEQQ LPPPGHTSCP PGASPVGSGG GPLFFGMRPA  720
PGTLQPSGGE GGPFFGTPPS IQGSAGPSPT QQLLPPQIYP PPMQLPPAHM QHQALGHGQQ  780
QPPPPQQQLQ HRLGLDQGQQ QQQLWDHRHY PQQQQQQQQR PSHDGGLRHD QTASTPVDIP  840
GVKGAAGEGA AAGGAAVSAP VAVGDQEAQQ EGFLGLDRPA SGNLPNSLLP LLKEIWKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013900780.10.0putative zinc finger protein
TrEMBLA0A0D2N7D90.0A0A0D2N7D9_9CHLO; Putative zinc finger protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP35071314
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]