PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013900745.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family AP2
Protein Properties Length: 444aa    MW: 45972.7 Da    PI: 10.2959
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013900745.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.48.7e-14187238155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s ++GV++++++grW+++I+     + + k+++lg f  +e Aa+a++ a++k +g
  XP_013900745.1 187 SSFRGVTRHRRSGRWESHIWI----KeMGKQVYLGGFEVEESAAEAYDMAALKTKG 238
                     679******************....3344**********************99765 PP
2AP235.33e-11281330155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+ ++ +grW+A+I  p   g +++++lg +  + +Aa+a++ a  +l+g
  XP_013900745.1 281 STYRGVTAHP-SGRWEARIGIP---G-SRHIYLGLYSEERDAARAYDTALVRLKG 330
                     56********.7*********8...3.6**********99*********999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.2E-13187247IPR016177DNA-binding domain
CDDcd000181.40E-15187248No hitNo description
SMARTSM003805.1E-21188252IPR001471AP2/ERF domain
PfamPF008472.5E-8188236IPR001471AP2/ERF domain
PROSITE profilePS5103217.148188246IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-16188247IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-13281338IPR016177DNA-binding domain
CDDcd000181.05E-13281337No hitNo description
SMARTSM003807.9E-18282344IPR001471AP2/ERF domain
PfamPF008471.4E-5282328IPR001471AP2/ERF domain
PROSITE profilePS5103215.857282338IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-15282338IPR001471AP2/ERF domain
PRINTSPR003672.3E-5283294IPR001471AP2/ERF domain
PRINTSPR003672.3E-5320340IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0040019Biological Processpositive regulation of embryonic development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MSCNQAWSPS SDPPSNKPRH RTGRAAGAAT ALPLEPGPVA RAASGGRRQS ERAPCSKRAP  60
TSSKTRKRRV SADSEDEDWS AGGEGDGSDD SGDEASGGGG GGDANGAASS SSGGGGSGRS  120
RGAAKRRRRA APAAPAVAAS KRSSGRIRAG GGGTAAATHR RVPRAPVAGA VAATDGASAA  180
AEERHSSSFR GVTRHRRSGR WESHIWIKEM GKQVYLGGFE VEESAAEAYD MAALKTKGLD  240
VKTNFDKSRY GDLLAVLHTI TTEELVMAVR RQSQGFSRGS STYRGVTAHP SGRWEARIGI  300
PGSRHIYLGL YSEERDAARA YDTALVRLKG MSAATNYSLA DYCYHLAEHY TVAQMIEGGD  360
PAGRLLRPQE ARPEFEAWIK GGLEGVGLAM PPAALERAKR DTSAADKRSG DGTADAAGRG  420
EGGAAIAAAA VAKVVAQGPA GQHA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013900745.10.0hypothetical protein MNEG_6240
TrEMBLA0A0D2N7A60.0A0A0D2N7A6_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.23e-35AP2 family protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]