PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013899915.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

MYB_related

Protein Properties

Length: 425aa MW: 42895.7 Da PI: 6.2239

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013899915.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43	1.1e-13	18	60	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed +++a+ +G++ W+ Ia+ ++ gRt++ +k+rw++ XP_013899915.1 18 PFSEYEDAVILKAHDIHGNK-WSVIAKLLP-GRTDNAVKNRWNST 60 577889************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.784	4	65	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-19	5	64	IPR009057	Homeodomain-like
CDD	cd00167	8.58E-11	11	61	No hit	No description
SMART	SM00717	6.8E-12	15	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.59E-14	18	66	IPR009057	Homeodomain-like
Pfam	PF00249	7.3E-12	18	60	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MLAGEELKKG AWTPEEAPFS EYEDAVILKA HDIHGNKWSV IAKLLPGRTD NAVKNRWNST 60 LKRKAGTQGL RNRFLAKGVT LEMLMTQYAH HAHDNAAPAH HGGGRGGGGG GASDYSDSGD 120 EDDQPGDADG GGSTGSGASD DDGASPSVQG RHVIQQQHAV QQQQQQQQQQ HGAQQQQQRA 180 MQQQQQQQQY QASRFYRAAA GGCAGPPHLQ LRVQTSRLSG AAAAARCGSA GTMFSEEDDC 240 TDTFDFHYAA AGTSPGVHGT GVSPYPRGPS NLDDAYPHNT IQGLLDEFAA AGAAAAAAAA 300 AASAGLEDIC GGGGGAQGAA AAGTAASAAA CPDAACSAAA DGGADTRVDA PCGADTAAAA 360 TVASAASAAA TAAPVQPAAP AWPALVLRAA SGGEFGSKRD IVSSLSGAAD ARLLVGRFGR 420 HRGRA

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MLAGEELKKG AWTPEEAPFS EYEDAVILKA HDIHGNKWSV IAKLLPGRTD NAVKNRWNST  60
LKRKAGTQGL RNRFLAKGVT LEMLMTQYAH HAHDNAAPAH HGGGRGGGGG GASDYSDSGD  120
EDDQPGDADG GGSTGSGASD DDGASPSVQG RHVIQQQHAV QQQQQQQQQQ HGAQQQQQRA  180
MQQQQQQQQY QASRFYRAAA GGCAGPPHLQ LRVQTSRLSG AAAAARCGSA GTMFSEEDDC  240
TDTFDFHYAA AGTSPGVHGT GVSPYPRGPS NLDDAYPHNT IQGLLDEFAA AGAAAAAAAA  300
AASAGLEDIC GGGGGAQGAA AAGTAASAAA CPDAACSAAA DGGADTRVDA PCGADTAAAA  360
TVASAASAAA TAAPVQPAAP AWPALVLRAA SGGEFGSKRD IVSSLSGAAD ARLLVGRFGR  420
HRGRA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	6e-18	6	67	56	110	B-MYB
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	110	GGRGGGGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013899915.1	0.0	Myb-related protein B
TrEMBL	A0A0D2N491	0.0	A0A0D2N491_9CHLO; Myb-related protein B

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15	16	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	4e-18	myb domain protein 109

Link Out ? help Back to Top
Entrez Gene	25739938

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]