PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013899406.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family ERF
Protein Properties Length: 424aa    MW: 41595.8 Da    PI: 8.5121
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013899406.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-20371421155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+++AeIrdp+    +  r +lg+f+taeeAa+a+++a+++++g
  XP_013899406.1 371 CKFRGVRQRP-WGKFAAEIRDPR----CgSRLWLGTFDTAEEAARAYDRAALEIRG 421
                     79********.**********82....68*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.6E-14371421IPR001471AP2/ERF domain
CDDcd000182.52E-30371424No hitNo description
SMARTSM003801.5E-27372424IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-27372424IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-18372423IPR016177DNA-binding domain
PROSITE profilePS5103221.865372424IPR001471AP2/ERF domain
PRINTSPR003679.9E-11373384IPR001471AP2/ERF domain
PRINTSPR003679.9E-11395411IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MSTHTELPAA KPLQLGIQPL ATGSAGLPFQ LTPMPMLPGA FIPGFPGSLP GLQPGSLGAG  60
TPAVTPIGTP LDGATLLRLN QHLTQQLMAA AAGAAPAGSG PAGLGACTLP QVAPLVLPKT  120
DPDVLSGLDA SPSPGTKAAR AAAEAATAAA VAAATAAAAD AFRQDAARPR DTMQQQLLQQ  180
ALAQLQQQQA LARALGVLAP EGGGGGAVAG GGHSAADFAT ASAADGGGGG GDDEMLFEDD  240
DAGEASNAAA AAVSAPRAAG KRQPTPSAKA LAMGAPLSAM MGTSPSDSHL SFSCPGGHAF  300
PIGSWGQPCS VPGTGFAGLG TSPSSQPGSS PGVKSHIRGR SKLSSSLGAS ERLKLSAGAG  360
GAGGHGRNGA CKFRGVRQRP WGKFAAEIRD PRCGSRLWLG TFDTAEEAAR AYDRAALEIR  420
GGKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19373424658ATERF1
3gcc_A2e-19373424658ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013899406.10.0AP2-domain transcription factor, partial
TrEMBLA0A0D2MI620.0A0A0D2MI62_9CHLO; AP2-domain transcription factor (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.14e-15ERF family protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]