PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013899345.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family NF-YC
Protein Properties Length: 310aa    MW: 31858.8 Da    PI: 9.0649
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013899345.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC31.83.1e-101442141484
           NF-YC  14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 
                     ++ ++ ++Pl  +k+i+ +d+d k+ +a+a  l+s a e ++  ++ r+  +a  +kr+t+k  d++ +++
  XP_013899345.1 144 EQPRQPSFPLGVVKRIMAVDPDFKRATADAVWLISAAAEALLGLVAERAGKQALAKKRKTVKLEDLQHVIK 214
                     4556889***********************************99**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003985.6E-72118IPR009071High mobility group box domain
CDDcd000844.80E-63104No hitNo description
Gene3DG3DSA:1.10.30.103.5E-12329IPR009071High mobility group box domain
SuperFamilySSF470952.23E-10327IPR009071High mobility group box domain
PROSITE profilePS501189.7243104IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.5E-1274105IPR009071High mobility group box domain
SuperFamilySSF470952.23E-1074105IPR009071High mobility group box domain
SuperFamilySSF471133.69E-15136215IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.4E-13144214IPR009072Histone-fold
PfamPF008087.2E-10150213IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MPPPKGPTAY FLFTEEHRAA IQKELNEAAA VAVAAAAAAA AAVTTTATVG APPSPGQQDG  60
AASSSGAPAK PKAVSVAVVA KELGARWRAL PEDEKARYKE LAQQRASEAA AVAADVGGAP  120
GDECREDAVH GGAAADQEAG EADEQPRQPS FPLGVVKRIM AVDPDFKRAT ADAVWLISAA  180
AEALLGLVAE RAGKQALAKK RKTVKLEDLQ HVIKYDRRLV VAGLREVAED TAMFEAAAAT  240
AAAKAAAKPS KPKAGADEQG QLDASGGEGD AGGGKKTRQQ QSGAGRGKGR RGHEEDRAQR  300
KLSAFFTVKC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013899345.10.0hypothetical protein MNEG_7635
TrEMBLA0A0D2N2800.0A0A0D2N280_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP46741111
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]