PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013899289.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

MYB_related

Protein Properties

Length: 482aa MW: 49014.7 Da PI: 4.6378

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013899289.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.9	4.6e-08	362	398	3	36
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS- CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRt 36 rWT++E + lv++ +G+g+W+tI g Rt XP_013899289.1 362 RWTPDETDALVNLTYAHGPGNWRTILDAAGdrlRSRT 398 8*****************************9663333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.1E-7	357	415	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-5	362	399	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.8E-10	362	421	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.888	362	408	IPR017877	Myb-like domain
CDD	cd11660	4.61E-11	362	417	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MEDLDADKLE HLSALVYGVV GAPGAPCSVP APVTCRLLLR CMLPAFTPAD QLNTADSDGV 60 LVALGSIASL AGGCAGEFPA AVDLARITPP APLLAAAAAL HLARGVAAAV RQEGAAPEVG 120 RVQEVLEGLL QDSQLEAILP DTDLRDRAAE VVAELGACAG GGLAPGDVEA LTARVEALFD 180 AAALQADLEA YANAAWQELG PTYLQAHARE VLSGGEQPPA PGHATYGKPA DVFMSEPSPP 240 LRRDEGPGAD GGTGPAPTSD GAPLPFGGGD PEVLDGTAAA AAAAPPPAEA LSPHGGGGGG 300 AGARRGAITG AGGGARGREM RWDSPSPAPQ RAPAGPAVVA LPGGNTVAIN TSPALKRRKV 360 CRWTPDETDA LVNLTYAHGP GNWRTILDAA GDRLRSRTQA RCGWRVDLKD KWRNLENAGK 420 VLRDRREQRE AARANGYLPA EPAAPGAGRA KGRGGRRSGG GRSGVEVEEG IEDSDDDWDD 480 GP

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MEDLDADKLE HLSALVYGVV GAPGAPCSVP APVTCRLLLR CMLPAFTPAD QLNTADSDGV  60
LVALGSIASL AGGCAGEFPA AVDLARITPP APLLAAAAAL HLARGVAAAV RQEGAAPEVG  120
RVQEVLEGLL QDSQLEAILP DTDLRDRAAE VVAELGACAG GGLAPGDVEA LTARVEALFD  180
AAALQADLEA YANAAWQELG PTYLQAHARE VLSGGEQPPA PGHATYGKPA DVFMSEPSPP  240
LRRDEGPGAD GGTGPAPTSD GAPLPFGGGD PEVLDGTAAA AAAAPPPAEA LSPHGGGGGG  300
AGARRGAITG AGGGARGREM RWDSPSPAPQ RAPAGPAVVA LPGGNTVAIN TSPALKRRKV  360
CRWTPDETDA LVNLTYAHGP GNWRTILDAA GDRLRSRTQA RCGWRVDLKD KWRNLENAGK  420
VLRDRREQRE AARANGYLPA EPAAPGAGRA KGRGGRRSGG GRSGVEVEEG IEDSDDDWDD  480
GP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	453	460	GGRRSGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013899289.1	0.0	hypothetical protein MNEG_7689, partial
TrEMBL	A0A0D2MAG1	0.0	A0A0D2MAG1_9CHLO; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3956	9	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49850.1	2e-07	telomere repeat binding factor 3

Link Out ? help Back to Top
Entrez Gene	25740565

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]