PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013899189.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | MYB_related | ||||||||
Protein Properties | Length: 258aa MW: 27562.5 Da PI: 6.1648 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.6 | 2.8e-13 | 69 | 111 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 W ++E++ll++++ +G g+W+++++++g +++++qc++++++ XP_013899189.1 69 DWGADEELLLLEGCDVYGFGNWAAVSEHVG-TKSREQCREHYFS 111 6*****************************.***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00291 | 3.0E-9 | 6 | 51 | IPR000433 | Zinc finger, ZZ-type |
Pfam | PF00569 | 3.1E-9 | 9 | 41 | IPR000433 | Zinc finger, ZZ-type |
CDD | cd02335 | 4.14E-23 | 10 | 58 | No hit | No description |
PROSITE profile | PS50135 | 10.531 | 10 | 53 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF57850 | 2.83E-14 | 10 | 73 | No hit | No description |
PROSITE pattern | PS01357 | 0 | 12 | 39 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF46689 | 1.94E-12 | 62 | 114 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 19.593 | 65 | 117 | IPR017884 | SANT domain |
SMART | SM00717 | 4.9E-10 | 66 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-8 | 69 | 111 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.6E-13 | 69 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.89E-12 | 70 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MSDHGQRALY HCNYCHTDIS NEVRIKCADC QDFDLCLDCF AVGVEVTPHR NTHRYRVVDN 60 LSFPLLHPDW GADEELLLLE GCDVYGFGNW AAVSEHVGTK SREQCREHYF STYVDVPTFP 120 LPTPAPEMAG VDVRWLADQA RAGGGRKRQR LDPQQLQQAN ADNPRQAKAS AGGAPPAAAA 180 QQPPAAAQQQ QKGFAGAAPG AAGGAGPGGQ PGGLGLSSKG LPHGAAAGVK AGSGGWDTTG 240 WHAKRGEFDF EYDQEKQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6cw3_E | 8e-35 | 10 | 122 | 5 | 117 | Transcriptional adapter 2 |
6cw3_G | 8e-35 | 10 | 122 | 5 | 117 | Transcriptional adapter 2 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013899189.1 | 0.0 | Transcriptional adapter ADA2 | ||||
TrEMBL | A0A0D2MA80 | 0.0 | A0A0D2MA80_9CHLO; Transcriptional adapter ADA2 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP1874 | 6 | 6 |
Link Out ? help Back to Top | |
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Entrez Gene | 25740672 |
Publications ? help Back to Top | |||
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