PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013899004.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

ERF

Protein Properties

Length: 1077aa MW: 108370 Da PI: 6.6341

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013899004.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	25.2	4e-08	264	288	32	56
AP2 32 slgkfgtaeeAakaaiaarkklege 56 ++g+f taeeAa+a++aa+++l+g+ XP_013899004.1 264 WVGTFATAEEAARAYDAAALALHGP 288 9**********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04157	4.7E-60	6	225	IPR007286	EAP30
SuperFamily	SSF46785	2.12E-44	24	174	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.0E-25	91	171	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	3.6E-21	172	240	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	7.82E-10	175	239	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51032	11.891	223	295	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-9	262	295	IPR016177	DNA-binding domain
SMART	SM00380	8.6E-4	263	301	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.8E-11	263	296	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1077 aa Download sequence Send to blast
MRRRPGIAGL QRDVKAREQY RAAGEEVRRA TAAQMQEQMA LFRSKLEEFA FKHKAEIRQD 60 PVFRAQFHAM CANIGVDPLA SNKGMWAELL GFGDYYYELG VQILEACWAS RPLNGGLMEL 120 GALRSAVLRR RGALADPVSD DDITRAIKKL RCLGGGLDLV AIGRASYVRS VPGELNLDKN 180 RALEIAQDKG CLSLQDLSAR AGWARQRALD ILEALLKEGL AMVDDGAPGG ERLYWFPALS 240 GGSSGGGGAQ GLVAVAAAAA ATGWVGTFAT AEEAARAYDA AALALHGPAA RTNFRDPPEA 300 LAQCPQQAPS GGAPAPAALQ AMSMGGTDMP VAGDASFSKA HAAVFAVGAN EEAAGAAAHI 360 GARAGAAAAA RELHGVPISV PPVRTTSMDR APFAAPAPLR KLLAAAVDAG SPQAGGDSPA 420 LSSAACFHLL NRAGGSGSLL SGAAAAAAAT AALVRKRRAD DGVSSDGAPH DGGYGCHDGG 480 FRHYPLLAGA QHHSHASGSP SAFHAGGFSP ARGRGASDSP LSVDAEAHAA ALRAASGARR 540 GSRHAAAARG GSGVPSDWGP RSSLEGEEMD VDEGEDEGGE GGGAEDIGAE EEEEGLAHGP 600 VLPGGAKHAA GVGDGWAAPA EQDEAGAGTG AADEDAPAAA GAAEAAPPGL SPKDVAQDLL 660 RRALLLRDNV EEEHRASADA KAHAQAVQAE QAAAAAQAAQ EAQAAQVAQA AQAAQVAQVA 720 QAAPAAPPAR AQPGGEARVF EALQRRNAAT IASLKQLVAA LGPRAVEGML PSLTKLPTVQ 780 LLLRSIQHAA PQLVAAVAAE QRAAQQARLA QQAQQAQQAQ QAQQAARAAE ARWALLQQLR 840 AGVLARRQEQ AAAVAAEAAV RVSAARAAQA LRLQHGAHQA GRAPAPAEGA DAGERAVVEL 900 LSQVEAARVA AAAAAASPIL AAAASPQAGS PALPLWRAAS GASRGALAPA ATTRAETEAA 960 AAGGAEPAPA PAPMPGPSQL LQLLLAQHRL QQNRHVLMAA LQHQAACAPP LPSPRAPLSH 1020 AEAPPAKRQR TNGPGAAAFG GAEGFEAGWG GAVAEAAAAP PAGAASGHLD ALAAAAE

Sequence ? help Back to Top

Protein Sequence Length: 1077 aa Download sequence Send to blast

MRRRPGIAGL QRDVKAREQY RAAGEEVRRA TAAQMQEQMA LFRSKLEEFA FKHKAEIRQD  60
PVFRAQFHAM CANIGVDPLA SNKGMWAELL GFGDYYYELG VQILEACWAS RPLNGGLMEL  120
GALRSAVLRR RGALADPVSD DDITRAIKKL RCLGGGLDLV AIGRASYVRS VPGELNLDKN  180
RALEIAQDKG CLSLQDLSAR AGWARQRALD ILEALLKEGL AMVDDGAPGG ERLYWFPALS  240
GGSSGGGGAQ GLVAVAAAAA ATGWVGTFAT AEEAARAYDA AALALHGPAA RTNFRDPPEA  300
LAQCPQQAPS GGAPAPAALQ AMSMGGTDMP VAGDASFSKA HAAVFAVGAN EEAAGAAAHI  360
GARAGAAAAA RELHGVPISV PPVRTTSMDR APFAAPAPLR KLLAAAVDAG SPQAGGDSPA  420
LSSAACFHLL NRAGGSGSLL SGAAAAAAAT AALVRKRRAD DGVSSDGAPH DGGYGCHDGG  480
FRHYPLLAGA QHHSHASGSP SAFHAGGFSP ARGRGASDSP LSVDAEAHAA ALRAASGARR  540
GSRHAAAARG GSGVPSDWGP RSSLEGEEMD VDEGEDEGGE GGGAEDIGAE EEEEGLAHGP  600
VLPGGAKHAA GVGDGWAAPA EQDEAGAGTG AADEDAPAAA GAAEAAPPGL SPKDVAQDLL  660
RRALLLRDNV EEEHRASADA KAHAQAVQAE QAAAAAQAAQ EAQAAQVAQA AQAAQVAQVA  720
QAAPAAPPAR AQPGGEARVF EALQRRNAAT IASLKQLVAA LGPRAVEGML PSLTKLPTVQ  780
LLLRSIQHAA PQLVAAVAAE QRAAQQARLA QQAQQAQQAQ QAQQAARAAE ARWALLQQLR  840
AGVLARRQEQ AAAVAAEAAV RVSAARAAQA LRLQHGAHQA GRAPAPAEGA DAGERAVVEL  900
LSQVEAARVA AAAAAASPIL AAAASPQAGS PALPLWRAAS GASRGALAPA ATTRAETEAA  960
AAGGAEPAPA PAPMPGPSQL LQLLLAQHRL QQNRHVLMAA LQHQAACAPP LPSPRAPLSH  1020
AEAPPAKRQR TNGPGAAAFG GAEGFEAGWG GAVAEAAAAP PAGAASGHLD ALAAAAE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2zme_A	7e-69	2	239	3	239	Vacuolar-sorting protein SNF8
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013899004.1	0.0	ESCRT-II complex subunit VPS22, partial
TrEMBL	A0A0D2M9J2	0.0	A0A0D2M9J2_9CHLO; ESCRT-II complex subunit VPS22 (Fragment)

Link Out ? help Back to Top
Entrez Gene	25740855

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]