PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013898912.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family ERF
Protein Properties Length: 373aa    MW: 37563.8 Da    PI: 5.0201
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013898912.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-20282330355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+W+AeIrdp     +  +r +lg+f+taeeAa+a++aa+++++g
  XP_013898912.1 282 YRGVRQRP-WGKWAAEIRDP-----TvgARRWLGTFDTAEEAARAYDAAARAIRG 330
                     9*******.**********9.....4459***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.1E-31281338IPR001471AP2/ERF domain
SMARTSM003801.8E-34281344IPR001471AP2/ERF domain
PROSITE profilePS5103223.156281338IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-22281339IPR016177DNA-binding domain
CDDcd000181.26E-17282338No hitNo description
PfamPF008474.7E-13282330IPR001471AP2/ERF domain
PRINTSPR003672.9E-11282293IPR001471AP2/ERF domain
PRINTSPR003672.9E-11304320IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MSMPLVPVMF PLGSGPLTAV PLGGAGAPPN GAMGSNGLML APAPGMMMVP GSIPLAAPLA  60
GAGAGAPGVK ALPMAPLGSQ QLHQQLLQQQ LVLQQQIQQS QAALHKAAAQ KAAAAAAAAA  120
AFGATPLQAA EAAPQQQEPQ QQPQAAPSSP QAEVVAVPQA QQEQQQQQQQ QLQAASPVEA  180
VPSASSGSQE PAVGEEAAEQ APADPPAPHA ARSARAPRPR AAGDYEGGDD DDDDEDYLGD  240
EDGPTTAPAA RARGAGGAAK APGGAGSGVP AVVVSKGKNK TYRGVRQRPW GKWAAEIRDP  300
TVGARRWLGT FDTAEEAARA YDAAARAIRG PQARCNFALP HDGAAAAAQV AAGVEALRRA  360
DDRGRDGQPN VEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19278339264ATERF1
3gcc_A2e-19278339264ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013898912.10.0Ethylene-responsive transcription factor RAP2-2
TrEMBLA0A0D2JKV50.0A0A0D2JKV5_9CHLO; Ethylene-responsive transcription factor RAP2-2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.15e-17ERF family protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]