PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013898736.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | MYB_related | ||||||||
Protein Properties | Length: 598aa MW: 61996.3 Da PI: 6.6188 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.3 | 1.5e-12 | 38 | 80 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + ++T++E+ +v+a + ++ W++Ia+ ++ gRt++ +k++w+ XP_013898736.1 38 KSPFTEWEQAVIVRAQDVFTNR-WAAIAKLLP-GRTDNAIKNHWN 80 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.87E-14 | 23 | 87 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.8E-18 | 28 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.381 | 33 | 87 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-10 | 37 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-11 | 38 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.40E-8 | 40 | 83 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 598 aa Download sequence Send to blast |
MAASSEGRRG AWTQELCCSG AVTVLPMWCN QLAPGLLKSP FTEWEQAVIV RAQDVFTNRW 60 AAIAKLLPGR TDNAIKNHWN ATLNRKLSSA TERLDNRYLE DGATLDWLLA NRGTAAGGSC 120 APTSSRDSGG SEGSRFSAGR VGGRGSQAVS SGGVTKSTRR AVAVRTARAA RRAPVAAGVA 180 DSPAEPPAPP PPSEARQQRA AGEHLEKQQQ QQQQQQQQQQ QQQQQQQQEQ EAKPCSVADA 240 LITNDIPTCI SPQTNSASHL SWPLPADGSA AAAPAPDALG RRDSAASSCP NSQASAHLSA 300 CFGCAAAGVD ATTAGATTPV VSAQVVPAPP SGASFPSSAA LPPAATVPPP LPPPPPSAAR 360 EGVLRALKEQ RRLLDARQAA LRRQAEELQA LQQRQREEWR ALGLEICMRR EAAARALLPN 420 GPPHPQPPGA PSAPGPAAAP AAPWGARLGP LTPHDVMMLL QQQEQREQSQ LTGVLLHQSA 480 LHPQHHMQQH GSCAAPGPAW APALPGVFDD GIISGGGAPI TPAAHEHPFG TGPPLSAACV 540 SPSVSPGDAA SASSSAILLS EDDEEGLLGS CMGLGLLTGA DDLAAPAELF DWDPLAHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-18 | 28 | 89 | 49 | 110 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013898736.1 | 0.0 | Myb-related protein B | ||||
TrEMBL | A0A0D2MG81 | 0.0 | A0A0D2MG81_9CHLO; Myb-related protein B |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G39880.1 | 2e-19 | myb domain protein 25 |
Link Out ? help Back to Top | |
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Entrez Gene | 25741123 |
Publications ? help Back to Top | |||
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