PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013898736.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

MYB_related

Protein Properties

Length: 598aa MW: 61996.3 Da PI: 6.6188

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013898736.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.3	1.5e-12	38	80	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + ++T++E+ +v+a + ++ W++Ia+ ++ gRt++ +k++w+ XP_013898736.1 38 KSPFTEWEQAVIVRAQDVFTNR-WAAIAKLLP-GRTDNAIKNHWN 80 679*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.87E-14	23	87	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.8E-18	28	87	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.381	33	87	IPR017930	Myb domain
SMART	SM00717	2.6E-10	37	85	IPR001005	SANT/Myb domain
Pfam	PF00249	7.4E-11	38	80	IPR001005	SANT/Myb domain
CDD	cd00167	1.40E-8	40	83	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence Send to blast
MAASSEGRRG AWTQELCCSG AVTVLPMWCN QLAPGLLKSP FTEWEQAVIV RAQDVFTNRW 60 AAIAKLLPGR TDNAIKNHWN ATLNRKLSSA TERLDNRYLE DGATLDWLLA NRGTAAGGSC 120 APTSSRDSGG SEGSRFSAGR VGGRGSQAVS SGGVTKSTRR AVAVRTARAA RRAPVAAGVA 180 DSPAEPPAPP PPSEARQQRA AGEHLEKQQQ QQQQQQQQQQ QQQQQQQQEQ EAKPCSVADA 240 LITNDIPTCI SPQTNSASHL SWPLPADGSA AAAPAPDALG RRDSAASSCP NSQASAHLSA 300 CFGCAAAGVD ATTAGATTPV VSAQVVPAPP SGASFPSSAA LPPAATVPPP LPPPPPSAAR 360 EGVLRALKEQ RRLLDARQAA LRRQAEELQA LQQRQREEWR ALGLEICMRR EAAARALLPN 420 GPPHPQPPGA PSAPGPAAAP AAPWGARLGP LTPHDVMMLL QQQEQREQSQ LTGVLLHQSA 480 LHPQHHMQQH GSCAAPGPAW APALPGVFDD GIISGGGAPI TPAAHEHPFG TGPPLSAACV 540 SPSVSPGDAA SASSSAILLS EDDEEGLLGS CMGLGLLTGA DDLAAPAELF DWDPLAHL

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence Send to blast

MAASSEGRRG AWTQELCCSG AVTVLPMWCN QLAPGLLKSP FTEWEQAVIV RAQDVFTNRW  60
AAIAKLLPGR TDNAIKNHWN ATLNRKLSSA TERLDNRYLE DGATLDWLLA NRGTAAGGSC  120
APTSSRDSGG SEGSRFSAGR VGGRGSQAVS SGGVTKSTRR AVAVRTARAA RRAPVAAGVA  180
DSPAEPPAPP PPSEARQQRA AGEHLEKQQQ QQQQQQQQQQ QQQQQQQQEQ EAKPCSVADA  240
LITNDIPTCI SPQTNSASHL SWPLPADGSA AAAPAPDALG RRDSAASSCP NSQASAHLSA  300
CFGCAAAGVD ATTAGATTPV VSAQVVPAPP SGASFPSSAA LPPAATVPPP LPPPPPSAAR  360
EGVLRALKEQ RRLLDARQAA LRRQAEELQA LQQRQREEWR ALGLEICMRR EAAARALLPN  420
GPPHPQPPGA PSAPGPAAAP AAPWGARLGP LTPHDVMMLL QQQEQREQSQ LTGVLLHQSA  480
LHPQHHMQQH GSCAAPGPAW APALPGVFDD GIISGGGAPI TPAAHEHPFG TGPPLSAACV  540
SPSVSPGDAA SASSSAILLS EDDEEGLLGS CMGLGLLTGA DDLAAPAELF DWDPLAHL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-18	28	89	49	110	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013898736.1	0.0	Myb-related protein B
TrEMBL	A0A0D2MG81	0.0	A0A0D2MG81_9CHLO; Myb-related protein B

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15	16	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G39880.1	2e-19	myb domain protein 25

Link Out ? help Back to Top
Entrez Gene	25741123

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]