PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013898594.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

MYB_related

Protein Properties

Length: 498aa MW: 48587.8 Da PI: 4.5265

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013898594.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.7	1.3e-13	15	57	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed +++a+ +G++ W+ Ia+ ++ gRt++ +k+rw++ XP_013898594.1 15 PFSEYEDAVILKAHDIHGNK-WSVIAKLLP-GRTDNAVKNRWNST 57 577889************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.327	1	62	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-19	3	61	IPR009057	Homeodomain-like
CDD	cd00167	1.17E-10	8	58	No hit	No description
SMART	SM00717	6.8E-12	12	60	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.64E-14	15	63	IPR009057	Homeodomain-like
Pfam	PF00249	8.9E-12	15	57	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MDELKKGAWT PEEAPFSEYE DAVILKAHDI HGNKWSVIAK LLPGRTDNAV KNRWNSTLKR 60 KAGTQGLRNR FLSRGVTLDL LLTQFAHHAH DNAAASGHHA HRGGAASPCD SDDSGSDDME 120 DVTPSGGSTG GAGGDGSAGS GGSDDEGSSP AAHGHYGYAH GVAVGLGAAH AGVAAAYGAP 180 AYCYGAGAYG YAAPQQQLPH LRVHALAHGC AGAGSAGTTY SGGDDDDCCD TLDAMHFIGS 240 VGASAGAIAS GCSPVTQGSP FFGGVAPPAE PEDPNSQDSI QTLLDDFAAA GAAAAAASAA 300 AAAAAASAGG FEDVCGGIVV GAAADVGGHD AAWRAAGCSS SFSSKRELAG DEADGTASPL 360 KRLRICGSSG AFGAGAVACA DDELPICYAD QRAGGCGDAG AAAAAAVRQQ QQQQHAEAQP 420 AYQWGFAAGA AAPRAEAGCV GPSEDGQAGG GAGAGAAGGA AGEAGPFDLL DALPLSVRSC 480 LVDAAALYLA NDASGLAA

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MDELKKGAWT PEEAPFSEYE DAVILKAHDI HGNKWSVIAK LLPGRTDNAV KNRWNSTLKR  60
KAGTQGLRNR FLSRGVTLDL LLTQFAHHAH DNAAASGHHA HRGGAASPCD SDDSGSDDME  120
DVTPSGGSTG GAGGDGSAGS GGSDDEGSSP AAHGHYGYAH GVAVGLGAAH AGVAAAYGAP  180
AYCYGAGAYG YAAPQQQLPH LRVHALAHGC AGAGSAGTTY SGGDDDDCCD TLDAMHFIGS  240
VGASAGAIAS GCSPVTQGSP FFGGVAPPAE PEDPNSQDSI QTLLDDFAAA GAAAAAASAA  300
AAAAAASAGG FEDVCGGIVV GAAADVGGHD AAWRAAGCSS SFSSKRELAG DEADGTASPL  360
KRLRICGSSG AFGAGAVACA DDELPICYAD QRAGGCGDAG AAAAAAVRQQ QQQQHAEAQP  420
AYQWGFAAGA AAPRAEAGCV GPSEDGQAGG GAGAGAAGGA AGEAGPFDLL DALPLSVRSC  480
LVDAAALYLA NDASGLAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	8e-18	3	64	56	110	B-MYB
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013898594.1	0.0	Myb-related protein B
TrEMBL	A0A0D2M8E3	0.0	A0A0D2M8E3_9CHLO; Myb-related protein B

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15	16	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	2e-17	myb domain protein 109

Link Out ? help Back to Top
Entrez Gene	25741264

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]