PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013898289.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | MYB | ||||||||
Protein Properties | Length: 724aa MW: 73150.5 Da PI: 6.0104 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.5 | 8.6e-15 | 19 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 +g WT+eEd + v +v ++G ++Wk+Ia ++ + R +kqc++rw+++l XP_013898289.1 19 KGGWTPEEDAKVVGLVGEHGVRNWKKIADAFNesseNQRNPKQCRERWNNHL 70 688*********************************99************97 PP | |||||||
2 | Myb_DNA-binding | 36.4 | 1.2e-11 | 76 | 121 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++WT+eE+ lv+++k +G+ W++Iar+ gR ++ +k+ w++ XP_013898289.1 76 RDPWTEEEERELVEGHKTWGNQ-WSRIARERLPGRAENAIKNLWNTT 121 789*****************99.*****98777***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.079 | 16 | 74 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-13 | 18 | 72 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.58E-25 | 19 | 118 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.7E-23 | 21 | 78 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 5.9E-18 | 22 | 84 | No hit | No description |
CDD | cd00167 | 9.39E-12 | 22 | 70 | No hit | No description |
PROSITE profile | PS51294 | 14.943 | 75 | 126 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-8 | 75 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-16 | 79 | 124 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 724 aa Download sequence Send to blast |
MSSGAALQRT CIHPVAPSKG GWTPEEDAKV VGLVGEHGVR NWKKIADAFN ESSENQRNPK 60 QCRERWNNHL DPNIKRDPWT EEEERELVEG HKTWGNQWSR IARERLPGRA ENAIKNLWNT 120 TRRRNGSVPQ GSGPLEQYMV QLGMREPAAD VEAGSGGSGG DGGPRKRALA QPPPRAASDS 180 GGGGGGGGSS SGGSDGPKKR ARAQPVPHAA SDGGGGGGGG GGLAVELECH EQDPLWPPGF 240 GGAPLAAAVA IRAQAGAGAE VGVLEPSAAG PAHAPRCADR AVVPSHAWAE LFPDETSGSH 300 TSSHSGSRSS SHIDCGGASC PKCRHGIDSS FSTLLGDTCD GAHGLSQQCE RPVFQMETDM 360 AAGLMSWADD ELLGYGPGLS DEDAQLLASL CDPDTAAPDC EPPPPAGAQL ELRPADQPAA 420 AACAARPGGQ PYAAAGWGAA SWDVPARAPA VAGAPGGLVQ QQLRRSAQHS HSFNGSTGLT 480 PLTVPPILCG AANAAAEPPT PGVARDPRQF ISPADHAHAP VGAPVPLFAS GTSPSTMAAA 540 PDAGASRAPP GLTPRWAQLP AVWPPGQEVI VALSEGADPL PPSDAICSAL QAPTAGCPAG 600 AHSAHREVVS STSYGPQAVC GRAAAVAALC GGGSPADPMQ TLGPDAAVGA LAADLQAVLP 660 RLVANAYARA ALSGAVGRVV IGLRLGAAVP PSEPGLVVAV AARSSNEGAA VLKCVVDAIR 720 LLYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-31 | 19 | 124 | 7 | 106 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013898289.1 | 0.0 | Transcription factor MYB98 | ||||
TrEMBL | A0A0D2M7D3 | 0.0 | A0A0D2M7D3_9CHLO; Transcription factor MYB98 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27785.1 | 3e-31 | myb domain protein 118 |
Link Out ? help Back to Top | |
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Entrez Gene | 25741569 |
Publications ? help Back to Top | |||
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