PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013897485.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

bZIP

Protein Properties

Length: 592aa MW: 58889 Da PI: 8.1743

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013897485.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.4	4.6e-11	28	74	4	53
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 k e r+qkNReAArr R+R++ + +L+ + ++L +eN++L + k XP_013897485.1 28 EKQELRRQKNREAARRVRERRQTLVNQLRSERDQLRKENQQLMHLM---K 74 699*************************************997433...3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.9E-9	22	84	No hit	No description
SMART	SM00338	4.6E-4	25	89	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.611	27	84	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-7	28	81	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.56E-7	29	84	No hit	No description
PROSITE pattern	PS00036	0	33	47	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence Send to blast
MSRKSGRRAS LADEDHALDL SENDDDAEKQ ELRRQKNREA ARRVRERRQT LVNQLRSERD 60 QLRKENQQLM HLMKEQLEEI TVLRAAPVLR GASFCAASAA AAAAAAAAAT ARSDGGGAAC 120 SALGGGPGSP GGSQGANDAE SAGGAPAAAA AAAAAAAAAA AAAAAASAGS CADDVVVVTQ 180 DKETSLPIVT TMGPTGLKLT LRDLKKEDVM APAHGGLGTH DSAMSDPGAP WADERAQQRQ 240 QRSGGKRRAP GSPCDDDCVG GGAAGADCGR DARRGGLLPS VVSAPAPEAG ARTPRGGSRL 300 AHTSSMPAQE PPLKQRALAH APMQPPAHAR HPGAHLPPIR TGSSLSVAAA ALQAPGAATP 360 PAHTTAMAAA LVASSPLQAP LMAAGAHSPH HLAQRPAPLM HHGSLPAAPP LCSPAQSAAA 420 SLPMMMSAPA FQGSGDHAAA VAAAAMHDRA GSALCGGPPS GAGPRGAAAL RQQQQAQAAQ 480 QAAQHELQMQ HLQAQQMAEH HQLLAALGSY NFGGGGAPMT CGGSHAGLGP RGAGHGHSHA 540 PFALAAGGCG PSMVAAGGPP VPLAGAGRAL SLGRLGSLLD DDPGSLALLW QD

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence Send to blast

MSRKSGRRAS LADEDHALDL SENDDDAEKQ ELRRQKNREA ARRVRERRQT LVNQLRSERD  60
QLRKENQQLM HLMKEQLEEI TVLRAAPVLR GASFCAASAA AAAAAAAAAT ARSDGGGAAC  120
SALGGGPGSP GGSQGANDAE SAGGAPAAAA AAAAAAAAAA AAAAAASAGS CADDVVVVTQ  180
DKETSLPIVT TMGPTGLKLT LRDLKKEDVM APAHGGLGTH DSAMSDPGAP WADERAQQRQ  240
QRSGGKRRAP GSPCDDDCVG GGAAGADCGR DARRGGLLPS VVSAPAPEAG ARTPRGGSRL  300
AHTSSMPAQE PPLKQRALAH APMQPPAHAR HPGAHLPPIR TGSSLSVAAA ALQAPGAATP  360
PAHTTAMAAA LVASSPLQAP LMAAGAHSPH HLAQRPAPLM HHGSLPAAPP LCSPAQSAAA  420
SLPMMMSAPA FQGSGDHAAA VAAAAMHDRA GSALCGGPPS GAGPRGAAAL RQQQQAQAAQ  480
QAAQHELQMQ HLQAQQMAEH HQLLAALGSY NFGGGGAPMT CGGSHAGLGP RGAGHGHSHA  540
PFALAAGGCG PSMVAAGGPP VPLAGAGRAL SLGRLGSLLD DDPGSLALLW QD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013897485.1	0.0	hypothetical protein MNEG_9497
TrEMBL	A0A0D2MVW4	0.0	A0A0D2MVW4_9CHLO; Uncharacterized protein

Link Out ? help Back to Top
Entrez Gene	25742372

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]