PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013897312.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family AP2
Protein Properties Length: 439aa    MW: 49819 Da    PI: 10.4511
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013897312.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.51.6e-08130178156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     s+ykGV+wd+    W++ Ir        k+ ++g+f  + e a+a++ a++ l+ge
  XP_013897312.1 130 SQYKGVCWDRI--CWRVTIRYK-----GKQRYVGRFNDEVEGARAYDVAALLLFGE 178
                     78*******97..******993.....4**********99**********999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.36E-10130186IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-6131185IPR001471AP2/ERF domain
SMARTSM003801.5E-4131191IPR001471AP2/ERF domain
PROSITE profilePS510329.862131185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MVFEQSSSGG RGTGAAVAID CPGTQQQGEL ESKPPPPPPQ QQQQQQQQQQ QQQQRWQRWQ  60
QQQQRWQLQQ QRWQLQQWQQ QQQWQQWWWY QQLLQQQQQQ QQQQQQQQQQ QQQQQQQAQM  120
QRKQYGPKQS QYKGVCWDRI CWRVTIRYKG KQRYVGRFND EVEGARAYDV AALLLFGEEG  180
PVNFTLEEAR QLAPSFDNHP KMAALAALAQ RGDDKRPPCA APAAAPLPPP HPAPSTTRPA  240
AAAAGVGAAA SPQGKRLRKT PASFRDTCSH ASPAPSTAPR TPLASPGPPP ALAPQCAQAA  300
WDGTGVALAA SGGAAGAGAA GTQQQGELES PPPPQQQQQQ QRQQQQQQWQ QQQQWQQWWW  360
GQQLLQQQQQ NQQQQQQQQQ QQQQQQQQQQ QAQTQRKQLG PKRSQYKGVC RDATCWRATI  420
RYKGKQRYVG RCAGGGPAE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013897312.10.0hypothetical protein MNEG_9671
TrEMBLA0A0D2JFP80.0A0A0D2JFP8_9CHLO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-07AP2 family protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]