PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013897194.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family ERF
Protein Properties Length: 292aa    MW: 28393.5 Da    PI: 7.2347
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013897194.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.73.2e-14214265154
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkle 54 
                     s y+GV++dkk+ +W+++I++        +  +s+g+f+t+  Aa+a+++a+  l 
  XP_013897194.1 214 SEYRGVSYDKKKRKWRVQIKV----AalGKSGVSVGYFDTETAAARAYDRAAIGLL 265
                     569******************....44446**********99*********98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-11214278IPR016177DNA-binding domain
PROSITE profilePS5103213.788215277IPR001471AP2/ERF domain
SMARTSM003806.3E-6215283IPR001471AP2/ERF domain
PfamPF008473.4E-9215262IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-11215278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDSAVLGASV MLKPEAAEPR ISSSSAVGDG GGGFAAWGAP SGGVGAPGGA PHALGDAMGG  60
FKAERGGESM YGGVAGGAGG GGFADPGSPR LGGGIFGGAG AAVAGGLQGM PQFGMVPVDA  120
SHMGVRQAAR DASAGGAAAP QLSGASSLGA PSALAGPSGD DGGSSSGSMP PPAGRATAAA  180
AQAAAAAVHH HHHARDEDAG RLAGAAGMPQ VFRSEYRGVS YDKKKRKWRV QIKVAALGKS  240
GVSVGYFDTE TAAARAYDRA AIGLLGRQNC RTILNFPLEE YDNDNVPELV GG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013897194.10.0hypothetical protein MNEG_9787
TrEMBLA0A0D2M3Q00.0A0A0D2M3Q0_9CHLO; Uncharacterized protein
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]