PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013896924.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family GATA
Protein Properties Length: 659aa    MW: 66634.7 Da    PI: 8.2089
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013896924.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.42.7e-15623657135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+ Cg+t+Tp WR gp+g+ktLCn CG+++ k+ +
  XP_013896924.1 623 CVVCGATSTPVWRTGPQGPKTLCNRCGVRFSKMSR 657
                     999***************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.8E-10616656No hitNo description
SMARTSM004011.7E-4617659IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.385617659IPR000679Zinc finger, GATA-type
CDDcd002021.95E-7623654No hitNo description
PfamPF003203.3E-12623656IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.9E-11623656IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MEVAQLEAAA CRGDVPASGA EVWWRDCGSG ALQGGAGLRD QSAPSKGPGA AAAPSVSQQP  60
AQMEARQPAN RADEQRQEEP RQHLLELMVP TPLAASPPQQ QQQQQQGRMQ QEQQQQEPAA  120
ARPAAGPNPS EPGKVLHLRR QPAVRTHGAF LRRTLALKQL RCSVAPPPQP AAAAPTPARA  180
ALPSPPPASP DAREPQVAVS PSAGAAEAGC RATDGPAEEP CNPSATRSSS AASEHASVIF  240
ADFAPEFVAA PGGRALDRLL SCDSDQDAYY SASGPSKTAP FSAPACTAAD AAAPRAAAAA  300
AEAAAATWCP ALCYWDVADS ADDLALGGPK RFVRHDQEDV VDVVMTTAGA RARGCCAAAP  360
PAGRRPRSRA AASGSLAAAA AAAAAAQRPG DMGAAVAPRS AACEGAWAVH DALTANSATG  420
SPTAAMVSGM QRCEFGASPT LPPGCSMPVR APSCLAPGAC SPLSPSPLPS WQPQRRPLAA  480
LPMRAAPQPQ AEGGAEPEAE AGACALLAGA FPSRRAARAA QEQAPGALKD VAAADAAELQ  540
QRPLAHARRS ARPLSLLRQG GDAAAAAAAG YASQAAPGDL ACPDLPSADA AAANDGDSSD  600
GGAGKTKKRP ASRLLTRPHG CGCVVCGATS TPVWRTGPQG PKTLCNRCGV RFSKMSRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013896924.10.0hypothetical protein MNEG_10057
TrEMBLA0A0D2M2N50.0A0A0D2M2N5_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP43691012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.12e-11GATA transcription factor 20
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]