PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013896838.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | MYB_related | ||||||||
Protein Properties | Length: 165aa MW: 18168.8 Da PI: 5.2804 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.3 | 1.8e-08 | 77 | 124 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqky 47 + rWT++ l+++v+++G W+tI + g+ qck++++++ XP_013896838.1 77 KTRWTQDQIVALIEGVERHGLSAWRTIVQDPRlAGKNNMQCKDKFRNL 124 579*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.422 | 72 | 125 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.87E-11 | 76 | 127 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.2E-10 | 76 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-5 | 76 | 127 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.39E-11 | 79 | 125 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MQVLITDDGS EMLDRDATGG LVPISAYGIT DGSHVTLRIQ VPGVDDLDDV PLVDEAIVSS 60 AFALGVLQGR GGGNGRKTRW TQDQIVALIE GVERHGLSAW RTIVQDPRLA GKNNMQCKDK 120 FRNLCLTIIQ GRPERGLTLD WRLKDRVKTL IEQESIKLAE PPALW |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013896838.1 | 1e-117 | hypothetical protein MNEG_10143 | ||||
TrEMBL | A0A0D2KQC7 | 1e-115 | A0A0D2KQC7_9CHLO; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 2e-09 | telomere repeat binding factor 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 25727276 |
Publications ? help Back to Top | |||
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