PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013896461.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

Protein Properties

Length: 700aa MW: 72722.9 Da PI: 10.3853

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013896461.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	34.1	5e-11	653	698	53	98
EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++++++ lt+GW++Fv+a+++ +gD+vvF++ g+++ +l+ ++ r XP_013896461.1 653 CNTQRHLRLTSGWRDFVRAHNVLVGDTVVFERRGDDRSTLYTSIKR 698 78888999***********************999888888887766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.5E-9	600	689	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.55E-9	602	692	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.389	635	700	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.8E-8	651	699	IPR003340	B3 DNA binding domain
CDD	cd10017	5.66E-8	652	698	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence Send to blast
MDYQHYRDGG VAPHLAPRGQ GAASTTGTKR AAEAFPQKSA GGLQQAESLQ GPSKRLCAPQ 60 QCDSAVSSIT TWGPHAGNGG GAGGDLPLWR TLSSSTSAPA AAAATASAAM TPQDMALRDA 120 PAGGSFSAGA PPPSMMRVGS SMGGGAALQQ LRWPQQPSTS QPAASLLLEP GTGMDATVAA 180 VAAAAAAMQR HASGGGGGAA DGGRLLPPAA AASCGSSNKM VSPFTSGVLA CTAALWPQEL 240 RYLSAVGTAR QHSAALPLRT ASAPILSNGL SAGAGAAVAA NAALAAAANA APAAPAGLRG 300 GMEGPAQQYQ LPMPRPLVSR LASEAPAPAG PGGGDFRHLQ RGYSAPITQL LLQQQALQQQ 360 LIASAGAGAR GGAPSGGAAA PQLEQAPRLD LVGAGSLQRQ SSLMQQQASL QHQAPLQQQT 420 SLQHPQLLAQ QQQQQQQQQQ QQQQQQQAAL QQQQQQQQQQ QQQQHQQQQQ QQQQQQQQQA 480 AIQQLTTQQS LVKQESSQQQ QQQQQQQQQQ QQQQQQQQQA PLPLVRQPSR REQQQQKQQA 540 KQQPAAPAAE AVPAAGAAPG ADGPRGTAGE AQGAGARGAP SSTDDKTVKM SRAISCKAYL 600 KRLNITQPMA EALLPEMQLA TAPRGGSCAS GQGASKHYEL LFKRELVYEG AVCNTQRHLR 660 LTSGWRDFVR AHNVLVGDTV VFERRGDDRS TLYTSIKRAA

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence Send to blast

MDYQHYRDGG VAPHLAPRGQ GAASTTGTKR AAEAFPQKSA GGLQQAESLQ GPSKRLCAPQ  60
QCDSAVSSIT TWGPHAGNGG GAGGDLPLWR TLSSSTSAPA AAAATASAAM TPQDMALRDA  120
PAGGSFSAGA PPPSMMRVGS SMGGGAALQQ LRWPQQPSTS QPAASLLLEP GTGMDATVAA  180
VAAAAAAMQR HASGGGGGAA DGGRLLPPAA AASCGSSNKM VSPFTSGVLA CTAALWPQEL  240
RYLSAVGTAR QHSAALPLRT ASAPILSNGL SAGAGAAVAA NAALAAAANA APAAPAGLRG  300
GMEGPAQQYQ LPMPRPLVSR LASEAPAPAG PGGGDFRHLQ RGYSAPITQL LLQQQALQQQ  360
LIASAGAGAR GGAPSGGAAA PQLEQAPRLD LVGAGSLQRQ SSLMQQQASL QHQAPLQQQT  420
SLQHPQLLAQ QQQQQQQQQQ QQQQQQQAAL QQQQQQQQQQ QQQQHQQQQQ QQQQQQQQQA  480
AIQQLTTQQS LVKQESSQQQ QQQQQQQQQQ QQQQQQQQQA PLPLVRQPSR REQQQQKQQA  540
KQQPAAPAAE AVPAAGAAPG ADGPRGTAGE AQGAGARGAP SSTDDKTVKM SRAISCKAYL  600
KRLNITQPMA EALLPEMQLA TAPRGGSCAS GQGASKHYEL LFKRELVYEG AVCNTQRHLR  660
LTSGWRDFVR AHNVLVGDTV VFERRGDDRS TLYTSIKRAA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013896461.1	0.0	hypothetical protein MNEG_10522
TrEMBL	A0A0D2M8N6	0.0	A0A0D2M8N6_9CHLO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP8150	2	2

Link Out ? help Back to Top
Entrez Gene	25727693

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]