PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013896406.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family GATA
Protein Properties Length: 423aa    MW: 41827.8 Da    PI: 8.7168
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013896406.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.42.6e-153265134
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                    C +Cg+t++p+WR+gp g++ LCnaCG+++ +++
  XP_013896406.1 32 CCHCGATSSPQWRKGPKGKPILCNACGIRFLRTR 65
                    99***************************96665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-62480IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-112866No hitNo description
CDDcd002023.13E-133178No hitNo description
PROSITE profilePS5011411.8733259IPR000679Zinc finger, GATA-type
PfamPF003202.0E-123262IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403257IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-113261IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MPGETNSLAP TPGGGGGGAR RGKGKQELCG PCCHCGATSS PQWRKGPKGK PILCNACGIR  60
FLRTRSLGKV TPKKRRSPVG AGGGGSGGAA AKRLKLEDDD SDADEGRTSS GVEDALEDAP  120
PPDAETEEPT DEIQEDLVAL HTSLQAAHAA VKLEAASGAL PLGAHHLAFA ASAVRPAASA  180
AGRGGEEGAG AGAGGQAAAF VAAIKQQQAA ALQQRQQQQQ RQQQIALLQQ LQQHAATAQQ  240
QQQRTVASAG ATQQQQQQQQ QQQQQQLLLA PPPLSLLASA PPSLLQALGL SAPAAAPQSL  300
SQLLPKHEGQ GSAPSSPLVA PPGAPGALPA PPGLALCLER AHSASTNGAA GASPGSALAS  360
TATAVGLSAF SGAAGGLDSS LRLLLAGMLP GGALAAAGVE DASGVVVQRS RSKGPVASGG  420
KAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013896406.10.0hypothetical protein MNEG_10577
TrEMBLA0A0D2M8G10.0A0A0D2M8G1_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4501526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.18e-12GATA transcription factor 27
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]