PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013896406.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | GATA | ||||||||
Protein Properties | Length: 423aa MW: 41827.8 Da PI: 8.7168 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.4 | 2.6e-15 | 32 | 65 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +Cg+t++p+WR+gp g++ LCnaCG+++ +++ XP_013896406.1 32 CCHCGATSSPQWRKGPKGKPILCNACGIRFLRTR 65 99***************************96665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.4E-6 | 24 | 80 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.98E-11 | 28 | 66 | No hit | No description |
CDD | cd00202 | 3.13E-13 | 31 | 78 | No hit | No description |
PROSITE profile | PS50114 | 11.873 | 32 | 59 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.0E-12 | 32 | 62 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 32 | 57 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.4E-11 | 32 | 61 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MPGETNSLAP TPGGGGGGAR RGKGKQELCG PCCHCGATSS PQWRKGPKGK PILCNACGIR 60 FLRTRSLGKV TPKKRRSPVG AGGGGSGGAA AKRLKLEDDD SDADEGRTSS GVEDALEDAP 120 PPDAETEEPT DEIQEDLVAL HTSLQAAHAA VKLEAASGAL PLGAHHLAFA ASAVRPAASA 180 AGRGGEEGAG AGAGGQAAAF VAAIKQQQAA ALQQRQQQQQ RQQQIALLQQ LQQHAATAQQ 240 QQQRTVASAG ATQQQQQQQQ QQQQQQLLLA PPPLSLLASA PPSLLQALGL SAPAAAPQSL 300 SQLLPKHEGQ GSAPSSPLVA PPGAPGALPA PPGLALCLER AHSASTNGAA GASPGSALAS 360 TATAVGLSAF SGAAGGLDSS LRLLLAGMLP GGALAAAGVE DASGVVVQRS RSKGPVASGG 420 KAS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013896406.1 | 0.0 | hypothetical protein MNEG_10577 | ||||
TrEMBL | A0A0D2M8G1 | 0.0 | A0A0D2M8G1_9CHLO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP450 | 15 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47140.1 | 8e-12 | GATA transcription factor 27 |
Link Out ? help Back to Top | |
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Entrez Gene | 25727753 |
Publications ? help Back to Top | |||
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