PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013896123.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

GATA

Protein Properties

Length: 646aa MW: 66079.3 Da PI: 6.7301

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013896123.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	26.8	7.3e-09	95	127	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C nCgt +T WR+g +LCnaCG+y +k+++ XP_013896123.1 95 CGNCGTCHTRVWRHGA--ALQLCNACGMYLQKHNS 127 9*************..7779********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	5.7E-11	88	140	No hit	No description
PROSITE profile	PS50114	14.048	89	145	IPR000679	Zinc finger, GATA-type
SMART	SM00401	1.3E-5	89	138	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.8E-13	90	141	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	2.52E-10	95	133	No hit	No description
Pfam	PF00320	3.4E-6	95	127	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence Send to blast
MRAGAKHSAV NRVVAALSSH DRGRTAPADL AHMLVAAVGA PALVNAIDLG AAFLVDTPLQ 60 GLWRGLLALD PSGGQAEEGD EDVALEAAGH ADKMCGNCGT CHTRVWRHGA ALQLCNACGM 120 YLQKHNSHRP AELIRAHLER LDRDRAAADE ERRTLEAAAA AGLAEGPLPH PQEGPEAMKE 180 DGTPLGGGMG VQEPRQRAGE EDDCWEQQAA TELGPDGSPI RRSWRPKAAR RMEEGFVGGD 240 EVNWAVGALR GPLVSGNGSI DGAAQQLGFD CALYYQPTQL PSGAGRLGME LQQGGGQRQD 300 EAQEEIASPE AHRAVAALLA RCSQDSSTDA TPELAAQGLV RLRSDTTPPP SPLKSDAGHR 360 GAGTFLGSGV TFARNPHAAV PLPFAAGAFH ASGWGGAPAG AAGAGGDTGS RAASPSTTLL 420 TNGGLTLAAA AVGEGQLPAL RVPAGAPHRL SLQSSADSGS PLVAQMRAAA SGLRISDDTS 480 RDATPDGPLY GGALATAGTA APGAPSGPGL RPAHRGRKHK LQGRRRCGGA GGDESDEDYV 540 PGSEGSGGGG AAARQRGRSR GWSCDVGSDG DELMRTGPEG AARATAVAGA AVGQLEREME 600 APHSARAVNV ALRSVEALPH SPRSAERRRS GRPNSKEPKP SLKGPW

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence Send to blast

MRAGAKHSAV NRVVAALSSH DRGRTAPADL AHMLVAAVGA PALVNAIDLG AAFLVDTPLQ  60
GLWRGLLALD PSGGQAEEGD EDVALEAAGH ADKMCGNCGT CHTRVWRHGA ALQLCNACGM  120
YLQKHNSHRP AELIRAHLER LDRDRAAADE ERRTLEAAAA AGLAEGPLPH PQEGPEAMKE  180
DGTPLGGGMG VQEPRQRAGE EDDCWEQQAA TELGPDGSPI RRSWRPKAAR RMEEGFVGGD  240
EVNWAVGALR GPLVSGNGSI DGAAQQLGFD CALYYQPTQL PSGAGRLGME LQQGGGQRQD  300
EAQEEIASPE AHRAVAALLA RCSQDSSTDA TPELAAQGLV RLRSDTTPPP SPLKSDAGHR  360
GAGTFLGSGV TFARNPHAAV PLPFAAGAFH ASGWGGAPAG AAGAGGDTGS RAASPSTTLL  420
TNGGLTLAAA AVGEGQLPAL RVPAGAPHRL SLQSSADSGS PLVAQMRAAA SGLRISDDTS  480
RDATPDGPLY GGALATAGTA APGAPSGPGL RPAHRGRKHK LQGRRRCGGA GGDESDEDYV  540
PGSEGSGGGG AAARQRGRSR GWSCDVGSDG DELMRTGPEG AARATAVAGA AVGQLEREME  600
APHSARAVNV ALRSVEALPH SPRSAERRRS GRPNSKEPKP SLKGPW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013896123.1	0.0	hypothetical protein MNEG_10858
TrEMBL	A0A0D2KN54	0.0	A0A0D2KN54_9CHLO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4830	8	10

Link Out ? help Back to Top
Entrez Gene	25728062

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]