PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013896123.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family GATA
Protein Properties Length: 646aa    MW: 66079.3 Da    PI: 6.7301
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013896123.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA26.87.3e-0995127135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C nCgt +T  WR+g     +LCnaCG+y +k+++
  XP_013896123.1  95 CGNCGTCHTRVWRHGA--ALQLCNACGMYLQKHNS 127
                     9***************..7779**********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.7E-1188140No hitNo description
PROSITE profilePS5011414.04889145IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-589138IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-1390141IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.52E-1095133No hitNo description
PfamPF003203.4E-695127IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MRAGAKHSAV NRVVAALSSH DRGRTAPADL AHMLVAAVGA PALVNAIDLG AAFLVDTPLQ  60
GLWRGLLALD PSGGQAEEGD EDVALEAAGH ADKMCGNCGT CHTRVWRHGA ALQLCNACGM  120
YLQKHNSHRP AELIRAHLER LDRDRAAADE ERRTLEAAAA AGLAEGPLPH PQEGPEAMKE  180
DGTPLGGGMG VQEPRQRAGE EDDCWEQQAA TELGPDGSPI RRSWRPKAAR RMEEGFVGGD  240
EVNWAVGALR GPLVSGNGSI DGAAQQLGFD CALYYQPTQL PSGAGRLGME LQQGGGQRQD  300
EAQEEIASPE AHRAVAALLA RCSQDSSTDA TPELAAQGLV RLRSDTTPPP SPLKSDAGHR  360
GAGTFLGSGV TFARNPHAAV PLPFAAGAFH ASGWGGAPAG AAGAGGDTGS RAASPSTTLL  420
TNGGLTLAAA AVGEGQLPAL RVPAGAPHRL SLQSSADSGS PLVAQMRAAA SGLRISDDTS  480
RDATPDGPLY GGALATAGTA APGAPSGPGL RPAHRGRKHK LQGRRRCGGA GGDESDEDYV  540
PGSEGSGGGG AAARQRGRSR GWSCDVGSDG DELMRTGPEG AARATAVAGA AVGQLEREME  600
APHSARAVNV ALRSVEALPH SPRSAERRRS GRPNSKEPKP SLKGPW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013896123.10.0hypothetical protein MNEG_10858
TrEMBLA0A0D2KN540.0A0A0D2KN54_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4830810
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]