PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013895914.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

MYB_related

Protein Properties

Length: 543aa MW: 53309 Da PI: 10.4454

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013895914.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.1	3.7e-12	461	508	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 rW +eE + l+++v ++G+g+Wk+I + g ++Rt ++k++w+++ XP_013895914.1 461 RWQPEETDVLIKYVYEYGPGNWKAIIEVAGhllNNRTQVDLKDKWRNL 508 9*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.948	453	513	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-12	455	508	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-8	458	511	IPR001005	SANT/Myb domain
CDD	cd11660	6.69E-14	460	510	No hit	No description
Pfam	PF00249	6.3E-10	461	508	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.23E-14	461	513	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MRPSAGAHIV TADAPDEALS ALGYIYSLAI IRSAEFPASV DLRRLAPPAA LLDGLAALQL 60 ARHASGAARK GKAAVTADSV NAELSQLLAA ANLESIAGGK GLLARKALIL KEIGKTPSGS 120 KGGMTAAAAA DLAKRLAALF SADELQPALE AYAAAAWDAL GPTYLQASLA HEAEILSGGR 180 ERPAEGHAVY GPAAPAAAPS TAAASPAAQK AAPAARRGRN APTLAAPAPA AAAPAATTAA 240 AAPAPAAAAV PPAAVAAPAP AAKASKPPSA AAAAPAKAAS EPAAKPVSER RLRNGKTVQV 300 PAPKQEKGAP APASAPRAAA ASQPEAEPEA APGGKQKKGK AAKKSAAGGK GAKRPAADEA 360 AAGAAAEADV NARIAEQVVA EADAAAAAAA AAAAAAAAAG GSGGGSGSGR REDARGDPER 420 TGARAGATAA RRPSAGAAAP WPPTEPAPSG SPAPKRRRVV RWQPEETDVL IKYVYEYGPG 480 NWKAIIEVAG HLLNNRTQVD LKDKWRNLEN AGKVLRDRED QLRAAAAAAA APSAAQGQQD 540 GGA

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MRPSAGAHIV TADAPDEALS ALGYIYSLAI IRSAEFPASV DLRRLAPPAA LLDGLAALQL  60
ARHASGAARK GKAAVTADSV NAELSQLLAA ANLESIAGGK GLLARKALIL KEIGKTPSGS  120
KGGMTAAAAA DLAKRLAALF SADELQPALE AYAAAAWDAL GPTYLQASLA HEAEILSGGR  180
ERPAEGHAVY GPAAPAAAPS TAAASPAAQK AAPAARRGRN APTLAAPAPA AAAPAATTAA  240
AAPAPAAAAV PPAAVAAPAP AAKASKPPSA AAAAPAKAAS EPAAKPVSER RLRNGKTVQV  300
PAPKQEKGAP APASAPRAAA ASQPEAEPEA APGGKQKKGK AAKKSAAGGK GAKRPAADEA  360
AAGAAAEADV NARIAEQVVA EADAAAAAAA AAAAAAAAAG GSGGGSGSGR REDARGDPER  420
TGARAGATAA RRPSAGAAAP WPPTEPAPSG SPAPKRRRVV RWQPEETDVL IKYVYEYGPG  480
NWKAIIEVAG HLLNNRTQVD LKDKWRNLEN AGKVLRDRED QLRAAAAAAA APSAAQGQQD  540
GGA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	454	458	KRRRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013895914.1	0.0	hypothetical protein MNEG_11068
TrEMBL	A0A0D2LZQ9	0.0	A0A0D2LZQ9_9CHLO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3956	9	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72740.1	3e-08	MYB_related family protein

Link Out ? help Back to Top
Entrez Gene	25728293

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]