PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013895546.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | NF-YB | ||||||||
Protein Properties | Length: 210aa MW: 21043.5 Da PI: 4.0649 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 51.9 | 1.9e-16 | 3 | 98 | 5 | 96 |
NF-YB 5 drflPianvsrimkkvlP....anakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 d lP + v ri+k l +n ++ kda + e + i+f+t+ +sd c+++kr+ti++dd+l al +l f d v+pl+v l +r++ ++ XP_013895546.1 3 DTDLPKSVVKRIVKAKLDclgeGNVQLHKDATLALAESAKVLITFITAASSDICKEKKRQTISADDVLAALEDLEFGDLVAPLQVALDAHRQAAKA 98 67799999******99863323578899**************************************************************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.02E-24 | 3 | 113 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.1E-27 | 3 | 103 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-9 | 5 | 73 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0071897 | Biological Process | DNA biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003887 | Molecular Function | DNA-directed DNA polymerase activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MADTDLPKSV VKRIVKAKLD CLGEGNVQLH KDATLALAES AKVLITFITA ASSDICKEKK 60 RQTISADDVL AALEDLEFGD LVAPLQVALD AHRQAAKAKS QKRAEATKKR KEREGAEAAA 120 AAGGGAGDAA AGQDQRPAGS GEEGGGGAGS GSGSDGEGEG GEDGSDEGEA DGSGDGDEEK 180 DAEGQGGGSE EDKEGAGGGQ QDDGDEEMDE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013895546.1 | 1e-139 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A0D2M5K1 | 1e-137 | A0A0D2M5K1_9CHLO; DNA polymerase epsilon subunit 3 | ||||
STRING | XP_005648182.1 | 9e-31 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3453 | 13 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 7e-22 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Entrez Gene | 25728697 |
Publications ? help Back to Top | |||
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