PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013895127.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

MYB_related

Protein Properties

Length: 1064aa MW: 113039 Da PI: 7.133

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013895127.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.9	4e-17	24	69	3	48
SS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rWT eE+ +l +v+q+G++ +W++Ia+ + gR++kqc++rw++++ XP_013895127.1 24 RWTSEEHARLEALVRQYGTErNWALIAEGIR-GRSGKQCRERWLNHM 69 8****************************.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.642	17	73	IPR017930	Myb domain
SMART	SM00717	1.8E-12	21	71	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.76E-20	22	116	IPR009057	Homeodomain-like
CDD	cd00167	4.22E-13	24	69	No hit	No description
Pfam	PF00249	4.5E-15	24	68	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-19	24	75	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-4	74	122	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	9.559	74	124	IPR017930	Myb domain
Pfam	PF00249	2.3E-6	75	117	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-13	76	123	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1064 aa Download sequence Send to blast
MEALLGGAVR KAAGGAGGTR VLHRWTSEEH ARLEALVRQY GTERNWALIA EGIRGRSGKQ 60 CRERWLNHMR EGIIKGNWLP DEEFHLALCH ALVGNQWSQH CTRLRGRTEN SIKNYWNATL 120 RSKQGSKRRG FLWCYIDKIR GALDNEGLRH RAFGDTVHGV HLHNTGWLPA WLRARIASGD 180 LAVPQPGDAL GARGWKRLID KELAFLRDKD GAASATTDIP FPNPSSRSGA GGGAAGGGGA 240 ALLARPRDRE RERASGRREQ QLQEQQLRQR QQKQQQRRQQ QGGQQQEEQQ QQQQQQQQQQ 300 QQEQEQQQQP QQHWVLEPEQ ILQLHRHQQQ QQQQQQQQQQ QQQQQQQQQQ HLQHLQFYQI 360 TTGASGAHGY PDSHAAAPAA GLHLMCSAEL ADVMLMGDMD DDAYGCEDGD DEDDDGDDAD 420 DEAGCGDVKV RPELLLQQQL GTLRPHYASQ PCGAAITEGR PALDAAEAAT ASVPGLPRLV 480 VTAQQPGWWG SAGGGAFAAA VAAAAAAAPA SSADGERTPA LSRDPSFCGS VGSAGGAAPI 540 MARLRLASAS PAPHSPLAQP QPGANPFAPS AAVAGGSGQA HAGLVLPAVG LPRVYQPSLL 600 SSAASYGSEY SAASAIHGGG RHAQGQGPPP PGALSGSPTI STEVPGGAML FAGVQQQQQQ 660 HHLLFQQQQQ QQQQQQQQQQ QDGSRGSTPD CRAATVCSSP FGSPHAQSRG AFDSAWTPAS 720 SSAAATRLAD PTLPMSQAAQ PVLSRFAAGR GGYACQQAPG AAEVFDPYAP APAPHLLPQQ 780 HQYLYHHSQH YQAPPSLMQQ QQQQQQHQQP LQQPLQQQQQ QQLLQPSQQL QQPSQQQQPL 840 QPQQQQQQQQ QQQQQQQQQQ QQQQQQQQHA LPSLTRTEPS ADAMLPPPRV VLMQYAATGG 900 EGRQGAQRGV PEGAAALLPN PTRASCCGSI GSGDAGVPGS AGVRSSGGGG VVGGGSLSAS 960 LGLLSSGSLP SMLRGDSVLL LDGAPGRTSP SLSGPRGPSP GTGAVGRTAA VGGAPALGVH 1020 GGHVMMGSAA SADLTDAICR LVGGDSMREG MMMDAVLEDV LASP

Sequence ? help Back to Top

Protein Sequence Length: 1064 aa Download sequence Send to blast

MEALLGGAVR KAAGGAGGTR VLHRWTSEEH ARLEALVRQY GTERNWALIA EGIRGRSGKQ  60
CRERWLNHMR EGIIKGNWLP DEEFHLALCH ALVGNQWSQH CTRLRGRTEN SIKNYWNATL  120
RSKQGSKRRG FLWCYIDKIR GALDNEGLRH RAFGDTVHGV HLHNTGWLPA WLRARIASGD  180
LAVPQPGDAL GARGWKRLID KELAFLRDKD GAASATTDIP FPNPSSRSGA GGGAAGGGGA  240
ALLARPRDRE RERASGRREQ QLQEQQLRQR QQKQQQRRQQ QGGQQQEEQQ QQQQQQQQQQ  300
QQEQEQQQQP QQHWVLEPEQ ILQLHRHQQQ QQQQQQQQQQ QQQQQQQQQQ HLQHLQFYQI  360
TTGASGAHGY PDSHAAAPAA GLHLMCSAEL ADVMLMGDMD DDAYGCEDGD DEDDDGDDAD  420
DEAGCGDVKV RPELLLQQQL GTLRPHYASQ PCGAAITEGR PALDAAEAAT ASVPGLPRLV  480
VTAQQPGWWG SAGGGAFAAA VAAAAAAAPA SSADGERTPA LSRDPSFCGS VGSAGGAAPI  540
MARLRLASAS PAPHSPLAQP QPGANPFAPS AAVAGGSGQA HAGLVLPAVG LPRVYQPSLL  600
SSAASYGSEY SAASAIHGGG RHAQGQGPPP PGALSGSPTI STEVPGGAML FAGVQQQQQQ  660
HHLLFQQQQQ QQQQQQQQQQ QDGSRGSTPD CRAATVCSSP FGSPHAQSRG AFDSAWTPAS  720
SSAAATRLAD PTLPMSQAAQ PVLSRFAAGR GGYACQQAPG AAEVFDPYAP APAPHLLPQQ  780
HQYLYHHSQH YQAPPSLMQQ QQQQQQHQQP LQQPLQQQQQ QQLLQPSQQL QQPSQQQQPL  840
QPQQQQQQQQ QQQQQQQQQQ QQQQQQQQHA LPSLTRTEPS ADAMLPPPRV VLMQYAATGG  900
EGRQGAQRGV PEGAAALLPN PTRASCCGSI GSGDAGVPGS AGVRSSGGGG VVGGGSLSAS  960
LGLLSSGSLP SMLRGDSVLL LDGAPGRTSP SLSGPRGPSP GTGAVGRTAA VGGAPALGVH  1020
GGHVMMGSAA SADLTDAICR LVGGDSMREG MMMDAVLEDV LASP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-25	25	123	10	107	B-MYB
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013895127.1	0.0	Myb-related protein A
TrEMBL	A0A0D2J8M1	0.0	A0A0D2J8M1_9CHLO; Myb-related protein A

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP8667	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	6e-29	myb domain protein 119

Link Out ? help Back to Top
Entrez Gene	25729158

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]