PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013894873.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | E2F/DP | ||||||||
Protein Properties | Length: 199aa MW: 22294.4 Da PI: 4.7357 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 87.2 | 1.2e-27 | 46 | 110 | 1 | 70 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 r ++sL++lt+kfl+l+ek+e+gi++ln++a+eL +v ++RRiYDi+NVLe+++liekk+kn+i wk XP_013894873.1 46 RFDSSLGMLTKKFLNLIEKAEDGILDLNQAAEEL---QV--QKRRIYDITNVLEGVGLIEKKSKNNILWK 110 6789******************************...99..****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.2E-27 | 44 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.29E-18 | 46 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 9.3E-33 | 46 | 111 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 4.0E-25 | 48 | 110 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF144074 | 1.1E-9 | 131 | 189 | No hit | No description |
Pfam | PF16421 | 2.7E-6 | 134 | 190 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0051446 | Biological Process | positive regulation of meiotic cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MREDHEDDQD WQSPTRLGKR KTSRRMARSP DEKPSRETAN YGTGCRFDSS LGMLTKKFLN 60 LIEKAEDGIL DLNQAAEELQ VQKRRIYDIT NVLEGVGLIE KKSKNNILWK PMVMEPAVLP 120 GPDADAQQEM LDALNQQTAM LRDQEGALDA QIASVMDALR GMTEHPANKP YLFVTDEDIT 180 GLPCFAHGLT MSLIGLNCC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 6e-25 | 42 | 110 | 3 | 72 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Involved in the control of cell-cycle progression from G1 to S phase and from G2 to M phase. Stimulates cell proliferation and delays differentiation. Represses cell enlargement and endoreduplication in auxin-free conditions. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by light and by auxin. May be up-regulated by E2FA. {ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:18424613}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013894873.1 | 1e-148 | hypothetical protein MNEG_12111 | ||||
Swissprot | Q9FV71 | 2e-39 | E2FB_ARATH; Transcription factor E2FB | ||||
TrEMBL | A0A0D2KJ48 | 1e-147 | A0A0D2KJ48_9CHLO; Uncharacterized protein | ||||
STRING | EDP09526 | 5e-47 | (Chlamydomonas reinhardtii) | ||||
STRING | EFX60496 | 3e-49 | (Daphnia pulex) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3258 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22220.3 | 7e-42 | E2F transcription factor 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 25729441 |
Publications ? help Back to Top | |||
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