PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

XP_013894691.1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

Protein Properties

Length: 334aa MW: 34592.1 Da PI: 6.5314

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013894691.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	40.2	5.8e-13	19	70	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + t+ q e+Le+ + n++p+ ++ + LA++++Lte+ V+ WF rR + +k XP_013894691.1 19 QKTPLQKEVLEASYMINQNPTPDHCRALAQRIQLTEKEVRDWFSGRRRRVRK 70 45899*******************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.99E-14	4	72	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.86	11	71	IPR001356	Homeobox domain
SMART	SM00389	5.7E-13	14	75	IPR001356	Homeobox domain
CDD	cd00086	1.67E-10	16	72	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.9E-15	19	77	IPR009057	Homeodomain-like
Pfam	PF00046	3.1E-10	20	70	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MDGDDGGAPT GKTPAKPRQK TPLQKEVLEA SYMINQNPTP DHCRALAQRI QLTEKEVRDW 60 FSGRRRRVRK KEQKAAEAAG GGGASPPPGA AASGAAAAYA GTPQPPSRQP STGAHGSGGG 120 GGAPASAAAA SPGAASGWQH HHQQQPWEAD PLAGLTADEE AQLLELARQQ LPQPLREDGP 180 PLALRFDPPP PGANVGPAPT AAAGKRRAEG QAGPDGKRSR GGSVDGARTP VHESEGADWA 240 AAAAAGGERG WAARAEAEAR VAELEEQALQ LQQLLESCAD EAEAGRLRAE LAQRQVALEE 300 QRTLLAAPAP AADGAADRLA QQRAREVERQ RATQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	63	69	RRRRVRK
2	63	71	RRRRVRKKE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013894691.1	0.0	hypothetical protein MNEG_12292
TrEMBL	A0A0D2M2Z2	0.0	A0A0D2M2Z2_9CHLO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5105	8	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	4e-06	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Entrez Gene	25729640

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]