PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013894180.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family E2F/DP
Protein Properties Length: 455aa    MW: 47087.7 Da    PI: 7.2089
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013894180.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP80.41.5e-25205283271
         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     ++k+Lr++++k   ++ek+e+ g++t+neva+eLv+e            d+kn+rRR+YD++NVL+al++i k +k++i w+g
  XP_013894180.1 205 QGKGLRHFSMK---VCEKVESkGTTTYNEVADELVAEmkgsqledgvvyDEKNIRRRVYDAINVLMALDVILK-DKKAIIWRG 283
                     78*********...*****999***************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.10.108.0E-41755IPR011989Armadillo-like helical
Gene3DG3DSA:1.10.10.102.7E-38201286IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.3E-31204283IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.7E-22206283IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.67E-20207285IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011381.2E-25316419IPR014889Transcription factor DP, C-terminal
PfamPF087817.1E-22319413IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.09E-23322414No hitNo description
CDDcd144581.53E-24335411IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MDTTERNSHP QHHHHHHQQQ QQQQQQQQQQ QQQQQQQQQQ QQQQQQRQSA DPSTAPINSA  60
ADAAVLAAER ALAAARGTVA VLAGFDQQAS SRSTSYGQTA AAATHSEEAV NGFGGGNGAY  120
GANGAGPTIG IVRRAARRGA RGGDQATSFA SGGNAGAGGY SGGGGYGGSG GGGGSVFSGG  180
GGYGYGVQPI GPLGFAPSER TGGKQGKGLR HFSMKVCEKV ESKGTTTYNE VADELVAEMK  240
GSQLEDGVVY DEKNIRRRVY DAINVLMALD VILKDKKAII WRGFHADATG VLAGPGPSSC  300
APGAGRASSG SAAALSRAQE ARSGAAAAVE RKAAYLADLV EQQRALRALM ARNAASPVAP  360
TGTQLELPFL LVQAKPDATV EVQISDDMRD VQFDFMHSPF QIHDDAFVLR MIAEENRKGF  420
AVEAAAEAAA AALALAGGQG ERAQSHSQGG PFGSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B5e-30200288393PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013894180.10.0Transcription factor Dp-1
TrEMBLA0A0D2MJQ10.0A0A0D2MJQ1_9CHLO; Transcription factor Dp-1
STRINGEDP071211e-68(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP15991417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.15e-32Transcription factor DP
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]