PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013894024.1
Organism
Monoraphidium neglectum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
Family GATA
Protein Properties Length: 409aa    MW: 41202.9 Da    PI: 8.156
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013894024.1genomeBUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.16.7e-15124157134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +Cg++++p+WR+gp g++ LCnaCG+++ +++
  XP_013894024.1 124 CCHCGASSSPQWRKGPKGKPILCNACGIRFLRTR 157
                     99***************************96665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-5116172IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.38E-10119157No hitNo description
CDDcd002022.55E-10123168No hitNo description
PfamPF003204.0E-12124154IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.675124151IPR000679Zinc finger, GATA-type
PROSITE patternPS003440124149IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-11124153IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MQAFQERYLL LVDTASDMDS THSDASEVTH EFVRRPGSGR RKQHAPWRSP WDASVLTVYS  60
GPPSSATSSP IKPSASAAAA AVAAAAAAAA TALDCATPCS GSAAAAAAAA SRRGKGKQEL  120
CGPCCHCGAS SSPQWRKGPK GKPILCNACG IRFLRTRSLG KVTPKKRRGP AGPSAAGAAA  180
AKRLRLEDND ESDNDEDGRT SSGDGNLYSL EELPPPEADT EEPTDEPQDD VIALQLASSP  240
LQLQLRAAAA ATAAAERAAA EAAAANGGFG GGDQAGGLLR QGQQQHLQHG QQQALLLQQL  300
LLQQQQALLA PAAAPSAFAG QPLRREGQGS VPNSPAVSPL PAPAAPAPAA ACALAPAGSA  360
TPAALDPSLR LMLGGGAALA RAASAGDDAA GVVVQRSRSK GPASSARTQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013894024.10.0hypothetical protein MNEG_12958
TrEMBLA0A0D2LTL50.0A0A0D2LTL5_9CHLO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4501526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.14e-11GATA transcription factor 27
Publications ? help Back to Top
  1. Bogen C, et al.
    Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production.
    BMC Genomics, 2013. 14: p. 926
    [PMID:24373495]