PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013893355.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | GATA | ||||||||
Protein Properties | Length: 177aa MW: 19096.8 Da PI: 8.6596 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.1 | 1e-17 | 79 | 111 | 1 | 33 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C Cg+t+Tp+WR+gp g++tLCnaCG+++++ XP_013893355.1 79 CYECGATNTPQWREGPTGPRTLCNACGMRFQRS 111 99***************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.3E-11 | 73 | 127 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.991 | 73 | 109 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.14E-12 | 76 | 110 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.8E-15 | 76 | 125 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.22E-14 | 78 | 122 | No hit | No description |
Pfam | PF00320 | 3.4E-15 | 79 | 110 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 79 | 104 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MAAVASRAGK QGGQAVYAAG NGLLPPMDVE LFQPAAEPPK RGRGGRRGGG GRGGGRRGGR 60 QQRREFSSSG GQGIPGEVCY ECGATNTPQW REGPTGPRTL CNACGMRFQR SQGKGQNRPR 120 RSASAELELG ERKVARTARG RGRGRGRGRW SRDEEFFDDE DEDEETDDLV LSDEDDD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 43 | 50 | GGRRGGGG |
2 | 46 | 55 | RGGGGRGGGR |
3 | 138 | 147 | RGRGRGRGRG |
4 | 138 | 148 | RGRGRGRGRGR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013893355.1 | 1e-121 | hypothetical protein MNEG_13626 | ||||
TrEMBL | A0A0D2MH06 | 1e-120 | A0A0D2MH06_9CHLO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP220 | 14 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 1e-12 | GATA transcription factor 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 25731107 |
Publications ? help Back to Top | |||
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