PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013892648.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | C3H | ||||||||
Protein Properties | Length: 75aa MW: 8592.9 Da PI: 8.2149 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.2 | 1.3e-08 | 6 | 29 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k +C +f + G C +Gd+Ck++H+ XP_013892648.1 6 KVQICYDFTK-GMCTRGDKCKYSHD 29 7789******.*************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.5E-5 | 4 | 30 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.892 | 4 | 31 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-7 | 5 | 29 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF16131 | 5.4E-7 | 6 | 35 | IPR032297 | Torus domain |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-6 | 6 | 29 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.028 | 38 | 65 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.29 | 39 | 64 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
MGADGKVQIC YDFTKGMCTR GDKCKYSHDI ATIVHFNSRE KGICFDYLRN QCHRGLLCRF 60 SHDLSNIAQQ CQLVC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013892648.1 | 9e-50 | putative zinc finger protein | ||||
Refseq | XP_013900780.1 | 2e-44 | putative zinc finger protein | ||||
TrEMBL | A0A0D2KCU4 | 2e-48 | A0A0D2KCU4_9CHLO; Putative zinc finger protein | ||||
TrEMBL | A0A0D2N7D9 | 5e-43 | A0A0D2N7D9_9CHLO; Putative zinc finger protein | ||||
STRING | XP_002946451.1 | 2e-42 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3507 | 13 | 14 |