PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013892411.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

bHLH

Protein Properties

Length: 426aa MW: 44221.4 Da PI: 10.1274

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013892411.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.9	8.5e-14	30	76	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++E+rRR riN++++ Lr+l+P+a ++ + a+ Le++++YI +L+ XP_013892411.1 30 RHQAAEQRRRTRINERLDLLRKLVPHA-----ERANTASFLEEVIKYIDHLK 76 599*********************9.....8***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.954	26	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-13	29	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.6E-14	29	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.1E-11	30	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.66E-9	31	79	No hit	No description
SMART	SM00353	1.7E-7	32	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MPAAKTQASN RGGGRTRSGD SRSSSAYASR HQAAEQRRRT RINERLDLLR KLVPHAERAN 60 TASFLEEVIK YIDHLKKRNL DLERALRAAT TTGGGAGRGA SGDAAPSVGA CEAPPPRAAR 120 ATAPGGAAAG FGSTAAAELG PEQVLQYQQQ QQQQEEQQRQ LAEDAPVPMA APLPLPLPLP 180 LPLPPTLDLE RLAGALLPPP QQQQQASAGG LEPLSQALLQ GALANPALLA NPVALQQLLA 240 VHSLAQQQQR EREQQQQAQQ QQLAAQLLLQ HLQQQQLEQQ RRQQQQTQQL LQQHSQQQQT 300 QRSSGGGGSS GAAGGSTRTF GETLPPELLQ LLREAAPRTP PAVPGLATSL DLTALSSLTA 360 AASGDPAGVG AAPLAQLAAQ PAAAGCALAA AAGAKRGAPA FAAPGAGSEE QDSAGAPKKR 420 QALQQA

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MPAAKTQASN RGGGRTRSGD SRSSSAYASR HQAAEQRRRT RINERLDLLR KLVPHAERAN  60
TASFLEEVIK YIDHLKKRNL DLERALRAAT TTGGGAGRGA SGDAAPSVGA CEAPPPRAAR  120
ATAPGGAAAG FGSTAAAELG PEQVLQYQQQ QQQQEEQQRQ LAEDAPVPMA APLPLPLPLP  180
LPLPPTLDLE RLAGALLPPP QQQQQASAGG LEPLSQALLQ GALANPALLA NPVALQQLLA  240
VHSLAQQQQR EREQQQQAQQ QQLAAQLLLQ HLQQQQLEQQ RRQQQQTQQL LQQHSQQQQT  300
QRSSGGGGSS GAAGGSTRTF GETLPPELLQ LLREAAPRTP PAVPGLATSL DLTALSSLTA  360
AASGDPAGVG AAPLAQLAAQ PAAAGCALAA AAGAKRGAPA FAAPGAGSEE QDSAGAPKKR  420
QALQQA

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013892411.1	0.0	hypothetical protein MNEG_14571
TrEMBL	A0A0D2LUT8	0.0	A0A0D2LUT8_9CHLO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5665	8	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	2e-09	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Entrez Gene	25732147

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]