PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013892274.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | GATA | ||||||||
Protein Properties | Length: 380aa MW: 38878.4 Da PI: 10.0527 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.4 | 3e-16 | 257 | 291 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cgt ++++WR+gp+ +++LCnaCGl++ k+++ XP_013892274.1 257 CSHCGTQSSSQWRSGPQEKPCLCNACGLFWSKRRS 291 ****************99999***********986 PP | |||||||
2 | GATA | 41 | 2.7e-13 | 307 | 340 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+ ++ +WR gp+g LC +CGl+yrk+++ XP_013892274.1 307 CNHCGADSSNQWRAGPEGVA-LCDPCGLHYRKTKT 340 ********************.***********976 PP | |||||||
3 | GATA | 30.7 | 4.5e-10 | 356 | 380 | 1 | 25 |
GATA 1 CsnCgttkTplWRrgpdgnktLCna 25 C++Cgt +p+WR gp + LCna XP_013892274.1 356 CHHCGTRFSPQWRGGPPEASVLCNA 380 ****************99999***8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 5.9E-8 | 251 | 302 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.08E-10 | 253 | 291 | No hit | No description |
CDD | cd00202 | 3.40E-12 | 256 | 290 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 257 | 282 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 4.0E-12 | 257 | 290 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 2.1E-13 | 257 | 291 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 10.515 | 257 | 285 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.5E-10 | 301 | 344 | No hit | No description |
SMART | SM00401 | 2.1E-5 | 303 | 350 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.1E-9 | 305 | 343 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.295 | 307 | 336 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 6.3E-11 | 307 | 340 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.75E-5 | 355 | 380 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.9E-6 | 356 | 380 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.13E-7 | 356 | 380 | No hit | No description |
Pfam | PF00320 | 5.7E-8 | 356 | 380 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MEAIPVGPHG GDGPTVKQAD ESCRAGSPPA PAPSASIASD TTALQPPASS SAAPGGSTAS 60 AAPAAKLLSL EQLQALMRQQ PRPLIPLLQP LLPLHKAGGA AHQQQLAAAL KSNAAAMAAI 120 AAATAARTAA VQQQQHQQLV AAAKEQDDGK APAAGGAAGA PTAAAGAKAV LSMQPVPLLQ 180 LGFSGPQLLA LKQGSAANAK LTQQLLAAVA KQQQQIQQQQ QIINKGQRMQ AAGLPPLPAA 240 AAAQLLRRGG GSLKGPCSHC GTQSSSQWRS GPQEKPCLCN ACGLFWSKRR SLPEETCKVA 300 VELEGPCNHC GADSSNQWRA GPEGVALCDP CGLHYRKTKT LPKRKRRSLA VAFQGCHHCG 360 TRFSPQWRGG PPEASVLCNA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013892274.1 | 0.0 | hypothetical protein MNEG_14710 | ||||
TrEMBL | A0A0D2LN82 | 0.0 | A0A0D2LN82_9CHLO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP450 | 15 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47140.1 | 4e-09 | GATA transcription factor 27 |
Link Out ? help Back to Top | |
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Entrez Gene | 25732299 |
Publications ? help Back to Top | |||
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