PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013892193.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | MYB | ||||||||
Protein Properties | Length: 113aa MW: 13294.6 Da PI: 10.1604 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.9 | 5.6e-14 | 9 | 53 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W Ede+l+ av ++G ++W++I++ + ++++kqck rw+ +l XP_013892193.1 9 IWKNTEDEILKAAVMKYGLNQWARISSLLV-RKSAKQCKARWYEWL 53 5999**************************.************986 PP | |||||||
2 | Myb_DNA-binding | 38.8 | 2.1e-12 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k+l++ W+tIa +g Rt+ qc +r+ k+l XP_013892193.1 60 TEWTREEDEKLLHLAKLLPTQ-WRTIAPIVG--RTPAQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.426 | 2 | 53 | IPR017930 | Myb domain |
SMART | SM00717 | 7.6E-14 | 6 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-19 | 9 | 61 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.01E-11 | 10 | 53 | No hit | No description |
Pfam | PF13921 | 4.4E-14 | 10 | 70 | No hit | No description |
SuperFamily | SSF46689 | 3.24E-22 | 33 | 109 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.517 | 54 | 107 | IPR017930 | Myb domain |
CDD | cd11659 | 1.08E-30 | 55 | 107 | No hit | No description |
SMART | SM00717 | 1.2E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-14 | 62 | 104 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
MRIQIKGGIW KNTEDEILKA AVMKYGLNQW ARISSLLVRK SAKQCKARWY EWLDPAIKKT 60 EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPAQCLERYE KLLDMAVGKD DRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 2e-59 | 2 | 111 | 3 | 112 | Cell division cycle 5-like protein |
5xjc_L | 2e-59 | 2 | 111 | 3 | 112 | Cell division cycle 5-like protein |
5yzg_L | 2e-59 | 2 | 111 | 3 | 112 | Cell division cycle 5-like protein |
5z56_L | 2e-59 | 2 | 111 | 3 | 112 | Cell division cycle 5-like protein |
5z57_L | 2e-59 | 2 | 111 | 3 | 112 | Cell division cycle 5-like protein |
5z58_L | 2e-59 | 2 | 111 | 3 | 112 | Cell division cycle 5-like protein |
6ff4_L | 2e-59 | 2 | 111 | 3 | 112 | Cell division cycle 5-like protein |
6ff7_L | 2e-59 | 2 | 111 | 3 | 112 | Cell division cycle 5-like protein |
6icz_L | 2e-59 | 2 | 111 | 3 | 112 | Cell division cycle 5-like protein |
6id0_L | 2e-59 | 2 | 111 | 3 | 112 | Cell division cycle 5-like protein |
6id1_L | 2e-59 | 2 | 111 | 3 | 112 | Cell division cycle 5-like protein |
6qdv_O | 2e-59 | 2 | 111 | 3 | 112 | Cell division cycle 5-like protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF458962 | 2e-54 | AF458962.1 Zea mays CDC5 protein (CDC5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013892193.1 | 7e-78 | pre-mRNA-splicing factor CDC5/CEF1 | ||||
Swissprot | P92948 | 4e-67 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A0D2KB48 | 2e-76 | A0A0D2KB48_9CHLO; Pre-mRNA-splicing factor CDC5/CEF1 | ||||
TrEMBL | A0A2V0PB65 | 2e-72 | A0A2V0PB65_9CHLO; Uncharacterized protein | ||||
STRING | XP_005851759.1 | 2e-70 | (Chlorella variabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP1040 | 16 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 2e-69 | cell division cycle 5 |
Link Out ? help Back to Top | |
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Entrez Gene | 25732387 |
Publications ? help Back to Top | |||
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