PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013892094.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 25868.3 Da PI: 11.461 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.4e-20 | 132 | 182 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+++AeIrdp+ + r +lg+f+taeeAa+a+++a+++++g XP_013892094.1 132 CKFRGVRQRP-WGKFAAEIRDPR----CgSRLWLGTFDTAEEAARAYDRAALEIRG 182 79********.**********82....68************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.67E-27 | 132 | 186 | No hit | No description |
Pfam | PF00847 | 4.3E-14 | 132 | 182 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.667 | 133 | 201 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.1E-31 | 133 | 196 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-27 | 133 | 185 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-19 | 133 | 185 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.4E-11 | 134 | 145 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-11 | 156 | 172 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MGAPPPTHPT PAAPVACALR GAGKRQPVPS AKALAAAGVL GTSPSDSHLS ASCPGLQAFP 60 IGSWGAPGSV PGFGGLNASP SPSPSSHLLG SSPGVKSHMR PRSKLSSSVG AAERLKLSAG 120 GGAGGLSKNG ACKFRGVRQR PWGKFAAEIR DPRCGSRLWL GTFDTAEEAA RAYDRAALEI 180 RGDKAVGGRG RTVTRGRMNH AKGLAVAAGH AAAATARAVG AAAPDCCHSG AGPRDSACSC 240 ATRGSPAPSP LRSLQASPLP A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 134 | 186 | 6 | 59 | ATERF1 |
3gcc_A | 2e-20 | 134 | 186 | 6 | 59 | ATERF1 |
5wx9_A | 3e-20 | 133 | 186 | 14 | 68 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013892094.1 | 1e-180 | hypothetical protein MNEG_14889 | ||||
TrEMBL | A0A0D2LMQ6 | 1e-179 | A0A0D2LMQ6_9CHLO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP132 | 15 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 2e-15 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Entrez Gene | 25732495 |
Publications ? help Back to Top | |||
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