PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013891688.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | MYB_related | ||||||||
Protein Properties | Length: 89aa MW: 10228.3 Da PI: 7.6139 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.2 | 5.3e-20 | 30 | 75 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W++eEd +l+++v+++G +W+ Ia++mg+gR +k+c++rw++ XP_013891688.1 30 ATWSPEEDSRLLELVHRYGAQNWTVIASHMGNGRNGKSCRLRWFNQ 75 58*****************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.696 | 24 | 80 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.86E-19 | 25 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-16 | 28 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-19 | 30 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.40E-13 | 31 | 74 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 31 | 89 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MRGAYRGDDS DSKSSGTDER HMGSAMLKRA TWSPEEDSRL LELVHRYGAQ NWTVIASHMG 60 NGRNGKSCRL RWFNQLDPRV NKEPFTEDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 5e-17 | 26 | 89 | 1 | 63 | C-Myb DNA-Binding Domain |
1msf_C | 5e-17 | 26 | 89 | 1 | 63 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a cell-specific local repressor of quiescent center (QC) self-renewal by cell divisions in the primary root. Counteracts brassinosteroid (BR)-mediated cell division in the QC cells (PubMed:24981610). Regulates maternally seed size, especially before the heart stage, promoting both endothelial cells expansion and cell number in the outer integument layer of the seed coat (PubMed:23911125). Modulates the expression of genes involved in cell wall metabolism such as cell division and expansion (PubMed:23911125, PubMed:24981610). Negative regulator of flowering via the repression of FT transcription (PubMed:25343985). {ECO:0000269|PubMed:23911125, ECO:0000269|PubMed:24981610, ECO:0000269|PubMed:25343985}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Levels follow a circadian cycle with a progressive decrease during the day time (at protein level) (PubMed:25343985). Down-regulated by brassinosteroids (BRs) in a dose- and time-dependent manner. Repressed by BES1. Auto-activation of expression (PubMed:24981610). Targeted to 26S proteasomal degradation by the CULLIN3 (CUL3)-based E3 ligases CRL3(BPMs) (PubMed:25343985). {ECO:0000269|PubMed:24981610, ECO:0000269|PubMed:25343985}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013891688.1 | 8e-62 | Transcription factor MYB44, partial | ||||
Swissprot | Q6R053 | 2e-21 | MYB56_ARATH; Transcription factor MYB56 | ||||
TrEMBL | A0A0D2K9G9 | 2e-60 | A0A0D2K9G9_9CHLO; Transcription factor MYB44 (Fragment) | ||||
STRING | Gorai.013G196500.1 | 6e-22 | (Gossypium raimondii) | ||||
STRING | PP1S74_264V6.1 | 1e-21 | (Physcomitrella patens) | ||||
STRING | PP1S91_13V6.1 | 2e-21 | (Physcomitrella patens) | ||||
STRING | fgenesh2_kg.6__1780__AT5G17800.1 | 9e-22 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17800.1 | 2e-23 | myb domain protein 56 |
Link Out ? help Back to Top | |
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Entrez Gene | 25732941 |
Publications ? help Back to Top | |||
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