PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013890670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | GATA | ||||||||
Protein Properties | Length: 85aa MW: 8074.04 Da PI: 11.068 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.9 | 1.8e-15 | 2 | 34 | 3 | 35 |
GATA 3 nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 +Cg+ ++p+WR+gp+ ++ +CnaCG +yr++++ XP_013890670.1 2 HCGVQESPQWRKGPQSKPVVCNACGTRYRRTNS 34 9*************99999**********9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 9.539 | 1 | 37 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.7E-11 | 2 | 35 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 4.0E-13 | 2 | 33 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.7E-10 | 2 | 37 | No hit | No description |
SMART | SM00401 | 6.7E-5 | 2 | 45 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 3.23E-8 | 2 | 38 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MHCGVQESPQ WRKGPQSKPV VCNACGTRYR RTNSLGPAIP STARPAAGGG GDGGSAPGGG 60 AKRKAASPPG GSGGGGSKGA AKAAC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013890670.1 | 2e-51 | hypothetical protein MNEG_16315 | ||||
TrEMBL | A0A0D2M8A0 | 4e-50 | A0A0D2M8A0_9CHLO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP450 | 15 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47140.1 | 2e-11 | GATA transcription factor 27 |
Link Out ? help Back to Top | |
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Entrez Gene | 25734062 |
Publications ? help Back to Top | |||
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