PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.O00877.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB_related | ||||||||
Protein Properties | Length: 184aa MW: 20717.7 Da PI: 11.1021 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.2 | 6e-16 | 63 | 107 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++T E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ Migut.O00877.1.p 63 VKMTSHEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 107 689******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.18E-20 | 42 | 113 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-8 | 42 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.31 | 43 | 56 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 24.856 | 57 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-15 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-13 | 63 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.43E-11 | 64 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-19 | 71 | 108 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MDRRGRCPAG TLRELVRRSP MGFHSKSIRF EGFGGRHYIG LKRTGKSCRL RWVNYLHPGL 60 KKVKMTSHEE RLVLELHSKW GNRWSRIARK LPGRTDNEIK NYWRTHMRKK AQQSKKQKKS 120 ISPISSSGNS SSSSSISNSP ATEDFTPAKE TSFYDTGGVE IKDLMIPAAA AAVEPGESKK 180 TGAE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-19 | 43 | 111 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.O00877.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012838674.1 | 1e-105 | PREDICTED: transcription factor MYB59-like | ||||
Swissprot | Q9LX82 | 6e-45 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A022QN27 | 3e-98 | A0A022QN27_ERYGU; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.4 | 3e-50 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Migut.O00877.1.p |
Publications ? help Back to Top | |||
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