PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.O00837.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 312aa    MW: 34676.4 Da    PI: 8.0257
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.O00837.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-05134153120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++C+ C+k+F+r  n++ H+
  Migut.O00837.1.p 134 FSCSVCTKTFNRYNNMQMHM 153
                       89*****************9 PP
2zf-C2H213.80.00017219241123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C +C+k+F  + + ++H +++
  Migut.O00837.1.p 219 FECRKCSKPFAVRGDWRTHEKNC 241
                       89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575115No hitNo description
SuperFamilySSF576673.47E-5130157No hitNo description
SMARTSM003550.24134156IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.512134161IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-5134153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
SMARTSM00355160182214IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.12E-5200239No hitNo description
Gene3DG3DSA:3.30.160.601.3E-4205239IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035587219239IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MHTRISLPYC VSTSCDEEEE DDGDWSTLLS LGPPGQQLHH RSQQNHHHHH RSFKQRRQGQ  60
SQNLQRNPNS SGQNGVTVAL HIGPPPSSTE SASPSAAAAA AVAKENPSSG VGVGHLGQYW  120
IPTPSQILVG PTQFSCSVCT KTFNRYNNMQ MHMWGHGSEY RKGPESLRGT KPASSILRLP  180
CYCCAEGCKN NIEHPSSKPL KDFRTLQTHY KRKHGAKPFE CRKCSKPFAV RGDWRTHEKN  240
CGKLWFCICG SDFKHKRSLK DHVRAFGQGH APHTENLYTS SYGAVQYGRR GVQVAGELDD  300
DEDEEDDDEE G*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.O00837.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012845678.10.0PREDICTED: zinc finger protein WIP6-like
SwissprotQ9FX681e-117ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A022RM480.0A0A022RM48_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-109C2H2-like zinc finger protein