PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.O00736.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 321aa    MW: 35329.1 Da    PI: 9.8325
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.O00736.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.7e-161461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W+t Ed ll ++++++G g+W++ ++  g+ R++k+c++rw +yl
  Migut.O00736.1.p 14 RGPWSTKEDTLLTNYIQEHGEGQWRSLPKNAGLLRCGKSCRLRWMNYL 61
                      89******************************99************97 PP
2Myb_DNA-binding51.32.7e-1667112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ +++E++l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l
  Migut.O00736.1.p  67 RGNISEDEEDLIVRLHGLLGNR-WSLIAGRLP-GRTDNEIKNHWNTHL 112
                       7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.059961IPR017930Myb domain
SuperFamilySSF466891.61E-2811108IPR009057Homeodomain-like
SMARTSM007173.0E-111363IPR001005SANT/Myb domain
PfamPF002492.2E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-211568IPR009057Homeodomain-like
CDDcd001672.01E-91661No hitNo description
PROSITE profilePS5129425.48262116IPR017930Myb domain
SMARTSM007179.8E-1566114IPR001005SANT/Myb domain
PfamPF002492.2E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-2469117IPR009057Homeodomain-like
CDDcd001674.14E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRSPCCSKV GLMRGPWSTK EDTLLTNYIQ EHGEGQWRSL PKNAGLLRCG KSCRLRWMNY  60
LRPGIKRGNI SEDEEDLIVR LHGLLGNRWS LIAGRLPGRT DNEIKNHWNT HLLKKLKNSG  120
VHVSTLRDTP KSAAKPKKSA AGAAGAVAGK KKKKQKKVVD VEEKINGSEK ALTVDQEKVS  180
NKSEDININI NINNINNPAK IKVYLPKPMR VSPGFSRTSS YDSLVSGASN SDGAGEADAP  240
EKEEEAAAGD GVSYMPVACR RCSRWSTRLL RRRDGVEEDD FIMGGDGGGF FRPLLHHSGD  300
SISSDVNMLE KVYDEYVQLL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154GKKKKKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.O00736.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR7800771e-113KR780077.1 Rehmannia glutinosa R2R3-MYB protein (MYB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840215.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A022R5X50.0A0A022R5X5_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-62myb domain protein 5