PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.O00612.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 533aa MW: 58483.6 Da PI: 5.4265 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.8 | 1.2e-18 | 39 | 86 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed +lvd+vk++G g+W+++ ++ g+ R++k+c++rw ++l Migut.O00612.1.p 39 KGPWTTAEDSILVDYVKRHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 86 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 3e-16 | 92 | 135 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T eE+ l++++++++G++ W++ a++++ gRt++++k++w++ Migut.O00612.1.p 92 KGAFTSEEERLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 135 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.62 | 34 | 86 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.55E-30 | 38 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-15 | 38 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-16 | 39 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-24 | 40 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.15E-11 | 41 | 86 | No hit | No description |
PROSITE pattern | PS00175 | 0 | 54 | 63 | IPR001345 | Phosphoglycerate/bisphosphoglycerate mutase, active site |
PROSITE profile | PS51294 | 26.023 | 87 | 141 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-16 | 91 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-15 | 92 | 135 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-25 | 94 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.04E-12 | 94 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MGHSTTTESE DGVLSADSPL SNDGENSGGS SNGNALLKKG PWTTAEDSIL VDYVKRHGEG 60 NWNAVQKHSG LSRCGKSCRL RWANHLRPNL KKGAFTSEEE RLIIELHAKM GNKWARMAAH 120 LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP DLCLHALPEN QHHGSPGIYD GDKGCHDIMQ 180 INGYETPDFM FDNFNISPYT SEFPGISATV STSNGFAPPQ FCTFAPQIPK CAQGTDAPMP 240 DYEGGAPIEA PPFHKNQIES YASKMSPFGL YFPYEPDPTQ KMFPFGVDKD SHFMSNGISS 300 ASEHFTCNQK SELPSLQYQE SGFGAWDSTP ESFDSLVQSP MLGPPSSHWP SPGSSGLLED 360 LLYEAKALSK SDNQSSDWAT SSNISHGDVK DSPALEKGSA GFKDYRDHPS SPSGNSIGSI 420 FNGYTSAGTF RSSLEENKSV RRVKSEVFDQ SWILDCESKK NPNNYLDYST PEASLGSYWV 480 EQNASYWKQQ GCPPTDAIGA LMGEDTKNTS IWGLSSCCWN NMPAVCQMSD IH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-32 | 37 | 140 | 5 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00490 | DAP | Transfer from AT5G06100 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.O00612.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012831718.1 | 0.0 | PREDICTED: transcription factor GAMYB-like | ||||
Refseq | XP_012831719.1 | 0.0 | PREDICTED: transcription factor GAMYB-like | ||||
Refseq | XP_012831720.1 | 0.0 | PREDICTED: transcription factor GAMYB-like | ||||
TrEMBL | A0A059PRV5 | 0.0 | A0A059PRV5_SALMI; MYB-related transcription factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14059 | 7 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 3e-95 | myb domain protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Migut.O00612.1.p |