PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.O00582.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | FAR1 | ||||||||
Protein Properties | Length: 602aa MW: 68285 Da PI: 8.3235 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 99.5 | 3.6e-31 | 54 | 145 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+ +++ +r+r++tr+gCka+l vk +++gkw+v+ ++ eHnHel+p Migut.O00582.1.p 54 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTVTRVGCKASLSVKIQDSGKWVVSGFVREHNHELVP 145 9***************************************998888545677889***********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-29 | 54 | 145 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.0E-21 | 266 | 342 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 7.2E-12 | 381 | 427 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 11.276 | 393 | 429 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 9.1E-10 | 404 | 431 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 602 aa Download sequence Send to blast |
MGGASPNDAN SIGSGSGGDA TSFFSLHTYL PDGDIDLEPY EGMEFESEES AKAFYNSYAR 60 RVGFSTRVSS SRRSRKDGAI IQRSFVCAKE GFRNLNEKRT KDREIKRPRT VTRVGCKASL 120 SVKIQDSGKW VVSGFVREHN HELVPPDQVH CLRSHRQISG PAKTLIDTLQ AAGMGPRRIM 180 SVLVKEYGGI SKVGFTEVDC RNYMRNNRQR NMEGDIQLLL DYLKQKQSEN PSFFYAIQGD 240 EDQYTGNVFW ADPKSRSDYN HFGDTVTFDT TYRSNRYRLP FVPFTGLNHH GQPVLFGCAF 300 LINESEASFV WLFKTWLSAM FGRSPLSITT EHDSVIRSAI MQKQASEFYT RKLFTRFQEE 360 LVSTLTFTAS KVDDNGEVTT YRVAKFGEEH KFYHVNFNVL EMKASCSCRM FEFSGLLCRH 420 VLAVFRVTNV LTLPSYYISK RWTRNAKSSV VLEERAIDPF NGYLESHTVR YNTLRHEAFK 480 FVDEGAESVE SYNVAMAVLM EASNKVAFAV KNEGKASVNN GPMRNKSSYC RSEGEGSSTQ 540 QLSEGDMDQK INELSMDLEC ANRKCEVYRT NLLSLLKDIE DHKQRLSIEV QNIKLSMKDG 600 L* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.O00582.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012829668.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Swissprot | Q9SZL8 | 0.0 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A0K9RV79 | 0.0 | A0A0K9RV79_SPIOL; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA435 | 22 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-177 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Migut.O00582.1.p |
Publications ? help Back to Top | |||
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