PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.O00541.1.p
Common NameLOC105949716, MIMGU_mgv1a023897mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 392aa    MW: 44014.6 Da    PI: 7.1957
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.O00541.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.2e-05222241120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++Cp C k+Fsr  n++ H+
  Migut.O00541.1.p 222 FSCPLCFKTFSRYNNMQMHM 241
                       89*****************9 PP
2zf-C2H214.10.00014306328123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C +Cgk F  + + ++H +++
  Migut.O00541.1.p 306 FMCRKCGKAFAVRGDWRTHEKNC 328
                       89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.36E-5218244No hitNo description
Gene3DG3DSA:3.30.160.607.3E-6222241IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.827222249IPR007087Zinc finger, C2H2
SMARTSM003550.61222244IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280224244IPR007087Zinc finger, C2H2
PROSITE profilePS508688.004264280IPR003616Post-SET domain
SuperFamilySSF576672.08E-6287326No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5302326IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808306326IPR007087Zinc finger, C2H2
SMARTSM0035549306326IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MADPYSNYFN NNNGNGGFNN NNNNNNNKWL NYLNPRNHFF NPSSSIPPPS ASSTVSSPYY  60
NFNFYNSTTT TNNYYYYGSS CSSSPPRSPP LREALPLISL KPTSMASSSS SAAAAAEEEP  120
PSSSYSGCMD LDMNVKNNYE QQEEEDLNLG LSPPVNCCST LSTTTTTTDL ISRRRRVVNY  180
DDDGSTENNC KEEVTVAAAT PLNKGQYWIP TPAQILIGPT QFSCPLCFKT FSRYNNMQMH  240
MWGHGSQYRK GPESLRGTQP TAMLRLPCYC CAPGCRNHID HPRSKPLKDF RTLQTHYKRK  300
HGIKPFMCRK CGKAFAVRGD WRTHEKNCGK LWYCACGSDF KHKRSLKDHI KAFGNGHGAY  360
GVDCFEEEEE EEEEAASEIE QDNNDPYSSR E*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.O00541.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012828491.10.0PREDICTED: zinc finger protein WIP5-like
SwissprotQ9SVY11e-129ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A022PVS40.0A0A022PVS4_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-118C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]