PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.O00498.1.p
Common NameLOC105967773, MIMGU_mgv1a004496mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 525aa    MW: 59071.2 Da    PI: 5.3533
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.O00498.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.1e-1732122199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k+++ +d+++   l+lp+kfa++  +    +++  +ed++g++W v++  +  +g+  l kGW++F ++++++ gDfvvF +++ s f  v
  Migut.O00498.1.p  32 FIKIMIGKDHTE--VLYLPRKFARKVVHLA--NQETEIEDSNGEKWPVTF--SYFDGSLSLHKGWNRFYQEHRMEMGDFVVFNYKEGSHF--V 116
                       667775555554..59*********95443..3478899***********..55666688************************987888..9 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v+++ +
  Migut.O00498.1.p 117 VQIYGR 122
                       998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-2229123IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.88830123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-2130123IPR015300DNA-binding pseudobarrel domain
CDDcd100174.28E-1631120No hitNo description
PfamPF023622.7E-1532122IPR003340B3 DNA binding domain
SMARTSM010191.1E-1332123IPR003340B3 DNA binding domain
CDDcd100172.05E-6429500No hitNo description
SuperFamilySSF1019361.84E-7433500IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-4448502IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.683456520IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MVRRVVAPDS CGKNREAFRE KQKEVSPIVT RFIKIMIGKD HTEVLYLPRK FARKVVHLAN  60
QETEIEDSNG EKWPVTFSYF DGSLSLHKGW NRFYQEHRME MGDFVVFNYK EGSHFVVQIY  120
GRNALERINF NKVRTRENKR PRPDPPAFPQ EEEPLSGPDS RKRKTDPVEK KNADVADLTC  180
MIDLTCMVDR DNVHYEREDR GFLFDLSNFE MKKEALDPNK IVGPVQMDVE INKLDTNEES  240
SRAEMDVICE GDLGNGFGGE IAPRDAEFTV DATPIKGEEI ASCYAEFTVD ATPIKSEDVA  300
PCHAQITADA TRVDVHSDKF LAESSDKSNS CKNAIDNIIS SFRDVLEKSE VFAGKEYASP  360
FASSALKDLF GKCAIKKELV EVEDIPDRFL GVSCDAEKVT SAPLVVKPEP DLLYDAVPFG  420
AIGQFSAVVK SLSFLELPIH IPSHPTRRES GYGKFVRVRD PMGRHWMILN PAIFSLKALT  480
GNWTEFCLAN GIKLGDECRF NPKMMISTLT GLILFVINGE FLRG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138142KRPRP
2159164SRKRKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.O00498.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847841.10.0PREDICTED: uncharacterized protein LOC105967773 isoform X1
RefseqXP_012847842.10.0PREDICTED: uncharacterized protein LOC105967773 isoform X1
TrEMBLA0A022QLX30.0A0A022QLX3_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-08B3 family protein