PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.O00397.3.p | ||||||||
Common Name | LOC105970489, MIMGU_mgv1a021370mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | SBP | ||||||||
Protein Properties | Length: 920aa MW: 102214 Da PI: 7.2174 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.2 | 1.6e-40 | 122 | 199 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC+ hsk++++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Migut.O00397.3.p 122 VCQVEDCRADLSNAKDYHRRHKVCDLHSKSTSALVGDVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 199 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.8E-32 | 118 | 184 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.727 | 120 | 197 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.19E-37 | 122 | 200 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.4E-29 | 123 | 196 | IPR004333 | Transcription factor, SBP-box |
CDD | cd00204 | 1.86E-5 | 674 | 808 | No hit | No description |
SuperFamily | SSF48403 | 5.33E-5 | 706 | 809 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.9E-5 | 707 | 807 | IPR020683 | Ankyrin repeat-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 920 aa Download sequence Send to blast |
MESKIGGEKI HKSMEWDSNE WRWDGALLVA TPLNSVPSDC RSRQLGSDEL VLLGDGNGNG 60 REKRDFEKRA RGVFEMEENE NEDVGLPNLK LGGQVYPIAE MEGKSGKKTK VSNALPMSSP 120 SVCQVEDCRA DLSNAKDYHR RHKVCDLHSK STSALVGDVM QRFCQQCSRF HVLQEFDEGK 180 RSCRRRLAGH NKRRRKTHPE NDEPGSNYLL ISLLRILSNI HSNSSDQIQD QDLVSHLLKN 240 LAHLTGTNPA GVLPVSQNGL SAPSGPGMTI PASDLTEKRT LIGGVSHAST SESPLPFRTT 300 SSDLFKEKDS NTGVGRTKLS NIDLNCAYDG SQDCMEDMPN TSHLNKTSPG GSSWLCKDSQ 360 RCGPPQNSGN SASTSSQSPS TSSGEAQSRT DRIVFKLFGK DPSDFPLLLR KQILDWLSNS 420 PTDIESYIRP GCIILTIYLH MEKSSWDELY CNLTSSLLRL LNSSTDSFWR TGWIYTRVHH 480 HVTFMYNGQV VLDTPLPVRN HQSCRISSIK PIAVTVSEGV HFVVKGFNLS RSTSRLLCAL 540 EGKYLVQENC GDMIGRADSF IEHNQIQSLT FSCAVPNIVG RGFIEIEDHG LSSSFFPFIV 600 AEKDVCSEIC TLESVIEDAN EIQVRNEALD FIHEMGWLLQ RNRLKSRLGD GDLFPFERFR 660 RLTEFSVDHD WCAVVKKLLR ILFDDGTVDL GPQNSNIVAL LNDVGLVHRA VRRKCSSMVQ 720 FLLNETNPLA DDGGGAHLYL FRPDAAGPGG LTPLHIAASL DGCENVLDAL TEDPGSVGIE 780 EWKRGRDSSG LTAHDYACIR GQYSYINIVQ RKVDKKSAVV GVHIGDSSSS RGEVVLSVSV 840 EKTMEIERRR RRCGECEERI MRYGNRSTRG RVRIYRPAML SLVGIAAVCV CTALLFKSSP 900 EVLFSFRPFR WDQLKYGSQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-30 | 122 | 196 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 191 | 197 | KRRRKTH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00060 | PBM | Transfer from AT3G60030 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.O00397.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT717966 | 1e-179 | KT717966.1 Erythranthe guttata squamosa promoter-binding protein 3 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012850775.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 12 | ||||
Refseq | XP_012850776.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 12 | ||||
Swissprot | Q9S7P5 | 0.0 | SPL12_ARATH; Squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A022QE34 | 0.0 | A0A022QE34_ERYGU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60030.1 | 0.0 | squamosa promoter-binding protein-like 12 |
Link Out ? help Back to Top | |
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Phytozome | Migut.O00397.3.p |
Entrez Gene | 105970489 |
Publications ? help Back to Top | |||
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