PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.O00397.1.p
Common NameLOC105970489, MIMGU_mgv1a021370mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family SBP
Protein Properties Length: 930aa    MW: 103143 Da    PI: 7.3054
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.O00397.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.11.6e-40122199178
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       +Cqve+C+adls+ak+yhrrhkvC+ hsk++++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Migut.O00397.1.p 122 VCQVEDCRADLSNAKDYHRRHKVCDLHSKSTSALVGDVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 199
                       6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-32118184IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.727120197IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.32E-37122200IPR004333Transcription factor, SBP-box
PfamPF031107.5E-29123196IPR004333Transcription factor, SBP-box
CDDcd002041.88E-5684818No hitNo description
SuperFamilySSF484035.51E-5716819IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.9E-5717817IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 930 aa     Download sequence    Send to blast
MESKIGGEKI HKSMEWDSNE WRWDGALLVA TPLNSVPSDC RSRQLGSDEL VLLGDGNGNG  60
REKRDFEKRA RGVFEMEENE NEDVGLPNLK LGGQVYPIAE MEGKSGKKTK VSNALPMSSP  120
SVCQVEDCRA DLSNAKDYHR RHKVCDLHSK STSALVGDVM QRFCQQCSRF HVLQEFDEGK  180
RSCRRRLAGH NKRRRKTHPE NDEPGSNYLL ISLLRILSNI HSNSSDQIQD QDLVSHLLKN  240
LAHLTGTNPA GVLPVSQNVG TSLGTALKGL SAPSGPGMTI PASDLTEKRT LIGGVSHAST  300
SESPLPFRTT SSDLFKEKDS NTGVGRTKLS NIDLNCAYDG SQDCMEDMPN TSHLNKTSPG  360
GSSWLCKDSQ RCGPPQNSGN SASTSSQSPS TSSGEAQSRT DRIVFKLFGK DPSDFPLLLR  420
KQILDWLSNS PTDIESYIRP GCIILTIYLH MEKSSWDELY CNLTSSLLRL LNSSTDSFWR  480
TGWIYTRVHH HVTFMYNGQV VLDTPLPVRN HQSCRISSIK PIAVTVSEGV HFVVKGFNLS  540
RSTSRLLCAL EGKYLVQENC GDMIGRADSF IEHNQIQSLT FSCAVPNIVG RGFIEIEDHG  600
LSSSFFPFIV AEKDVCSEIC TLESVIEDAN EIQVRNEALD FIHEMGWLLQ RNRLKSRLGD  660
GDLFPFERFR RLTEFSVDHD WCAVVKKLLR ILFDDGTVDL GPQNSNIVAL LNDVGLVHRA  720
VRRKCSSMVQ FLLNETNPLA DDGGGAHLYL FRPDAAGPGG LTPLHIAASL DGCENVLDAL  780
TEDPGSVGIE EWKRGRDSSG LTAHDYACIR GQYSYINIVQ RKVDKKSAVV GVHIGDSSSS  840
RGEVVLSVSV EKTMEIERRR RRCGECEERI MRYGNRSTRG RVRIYRPAML SLVGIAAVCV  900
CTALLFKSSP EVLFSFRPFR WDQLKYGSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-301221961084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191197KRRRKTH
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00060PBMTransfer from AT3G60030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.O00397.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7179661e-179KT717966.1 Erythranthe guttata squamosa promoter-binding protein 3 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012850775.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_012850776.10.0PREDICTED: squamosa promoter-binding-like protein 12
SwissprotQ9S7P50.0SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLA0A022QE340.0A0A022QE34_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18712466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.10.0squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]